CANTATAdb - search

Detailed information on CNT3085442

BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 1e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30129040	Vigna radiata	Corymbia citriodora	20.81	40.38	81.21	149	forward

Expression of CNT3085442

Peptides detected in this lncRNA

>peptide 1 (63 aa)
IIQITGTIKSSSRVVDIKTYLSLNKKLYKYNISPVSPFSNFSPMQCELSTSFFPNLQFPFKIV*

>peptide 2 (52 aa)
MSPSSISTTLFIDGRSFGFNCIHQSATIIIFFTISFSSSLKSFISISSSXVI*

>peptide 3 (38 aa)
MDDPLVLTVYTKVQLLSFSLLLAFPLRSNPLYLYLPLX*

>peptide 4 (38 aa)
MVPLAAVIVTMLLSIGYNFANPKSEIFGMKLSSNKMLWG

Sequence

>CNT3085442
CTATTATTCAAATAACAGGTACAATAAAGTCCAGTAGTAGAGTTGTAGATATCAAAACATATTTATCATTAAATAAAAAACTATACAAATATAACATTTC
ACCTGTTTCTCCTTTTTCTAATTTTTCACCAATGCAATGCGAACTCTCAACCTCATTTTTCCCCAACCTGCAATTTCCTTTCAAAATTGTTTAGATAGAA
CTGGTGGTTCGATCCTCTAAACTCATTTCATCAGGATATAAAGTAGGTTTTGGAGGTATTTCCAAATCTTCAATGTCTCCTTCAAGCATTTCTACTACTC
TATTCATTGATGGACGATCCTTTGGTTTTAACTGTATACACCAAAGTGCAACTATTATCATTTTCTTTACTATTAGCTTTTCCTCTTCGCTCAAATCCTT
TATATCTATATCTTCCTCTTNTGTAATATGATTATATATCCAAAGGGGAAAATAAAGTTGACTTGAGTGTTCTGCATGGGGATTTAGATTCTTCCTCTTG
CTTGCCATCTCCATCAACAACATTCCGAAACTATAGACATCAGCTTTGTGGGATATTCCTCCAATATTATTGTAAAACAATTCTGGAGCCATATATCCAA
TGGTTCCTCTTGCTGCTGTCATTGTGACAATGCTATTATCTATTGGATATAACTTTGCTAATCCAAAGTCAGAAATCTTTGGGATGAAGTTGTCATCCAA
TAAGATGTTATGGGGT