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Detailed information on CNT308524


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30460329Zea maysSaccharum spontaneum22.4745.4896.49171forward
CNT30142664Zea maysLolium perenne11.8329.1388.8990forward
CNT30100102Zea maysOryza rufipogon30.6271.2584.55233forward

Expression of CNT308524

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPAACVEGAVRKMGHTKSSWMPTLTGLLW*

>peptide 2 (33 aa)
PAPPLPQFLSPKNPYCTNKSVGRGNAKLYLRGD*

>peptide 3 (36 aa)
PPHRCHSSCHLKIPIAPIKAWVGVMPNCTYGATRNM*

>peptide 4 (95 aa)
MRKTAVSPGPYLPSNRETEAGREGAAGGPAEVAEEGGERARAAVEEEVVGRVDRGADAGGVRGGGGEEDGPHEELVDAHVDGVAVVGAVKGVVPL*

Sequence

>CNT308524
CCCGCCCCACCGCTGCCACAGTTCCTGTCACCTAAAAATCCCTATTGCACCAATAAAAGCGTGGGTAGGGGTAATGCCAAATTGTACTTACGGGGCGACT
AGAAATATGTAACCACCTGATAAGCATCACTGAATATACCAACTAAGGATGAAGCTCATCTGAAATTCTGTTATCTTCGCTTCATCAGATGGACTAACAA
TTTTCCCCCGTGGTCGTGGATACCAAAATCTAAGACACATGTACTCGAGAAACGATACCAACTGTAGCCGATCATATGAACATGATACAAATACATAGAA
ATCCAAGCACAGAAGACATCATATAAGCCATCACGACGAGCTAGGTCAAGGATCGATGCGAAAGACCGCCGTTTCCCCCGGCCCTTACCTTCCATCCAAC
AGAGAAACCGAGGCGGGCAGAGAGGGCGCCGCTGGCGGCCCAGCAGAGGTAGCAGAGGAGGGCGGCGAGCGCGCCCGCGCGGCGGTCGAGGAGGAAGTAG
TAGGCCGCGTAGACCGCGGCGCTGATGCCGGCGGCGTGCGTGGAGGGGGCGGTGAGGAAGATGGGCCACACGAAGAGCTCGTGGATGCCCACGTTGACGG
GGTTGCTGTGGTAGGCGCCGTAAAAGGCGTAGTGCCCCTCTAAGTCCAGGAGGCCGCCGCCGCCGCCGCTGCGAGGCTTCGCCATGGCTCTCGCCCTCGG
TTGCTTGCTCCCAGTTTCAGGTCACTTTGTTGGTGAGTTTGTTTTTCAGCGGGCAGTTGGG