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Detailed information on CNT3085220


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530066Vigna radiataEucalyptus grandis16.8232.2192.5200reverse complement
CNT30703171Vigna radiataQuercus lobata25.92.5893.51308forward
CNT30220823Vigna radiataHordeum vulgare25.99.7488.64308forward
CNT30314046Vigna radiataCamelina sativa25.98.0492.53308forward
CNT3082978Vigna radiataBrassica juncea25.93.7992.21308forward
CNT30142437Vigna radiataLolium perenne25.916.2587.01308forward

Expression of CNT3085220

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MNLNLIFCQSLLYLMNRLDLLLSLCCRRILKILMDSHSYCNNFQPCGNDQ*

>peptide 2 (32 aa)
MFVQQYLQPLYELRSKKLYILLKIALRVDCFE*

>peptide 3 (32 aa)
MDWIKRIGHSKIRIHFLSKIFTCSIPYLNGLA*

Sequence

>CNT3085220
AGATACATGATCATTGGCTCCTGAATCTATAATCCACATGACATGGTCTGTAGCATGAGAAATTGGTAGCACATTACCTATAAAAGAAGTATTTGGAGAG
AAAGTTGTACCAGTTTGATTGATGTGGGAAGTAGTTGTAGAGGATCCCAATTGTGTTTGTTGTTGTAGCAGGGCTATCAAATGTTGATATTGCTGAGGAG
TGATTTTTAACTCATTCGAGTCAGATACTTGGGCATCTGATGTTCGTACAGCAGTATCTACAACCCCTTTACGAGCTCCGTAGCAAGAAATTATATATTC
TGTTAAAGATAGCCCTTCGCGTAGATTGCTTTGAATAGGTAAATCAATCATTTGTCCTTGTGGATCCGACATTAATCCCCTCATACCTACTAATTGGTNT
ACTTGAGATGCATTTCCTCTAGCTCCCGAAAANGNCATTATATGGACTGGATTAAAAGGATCGGTCATTCTAAAATTAGGATTCATTTCTTGTCGAAAAT
ATTCACTTGTAGCATACCATATCTCAATGGATTGGCGTAAACAGGTCTAGTGTAGTTTATGCCCACGAGGGTAACCATGCTTCTTAAAGTATTCATCAAC
AGTGTGTCCAATGATATTGCAAAAAGTGCAAACCTTTGAATTTTATGAACCTAAATTTGATCTTCTGCCAAAGCCTCCTCTATTTGATGAATAGGCTCGA
CCTCCTCTTATCCCTTTGTTGTAGGAGGATTCTGAAGATCTTGATGGATAGTCATTCTTATTGTAACAATTTTCAGCCATGTGGTAATGATCAATGACAG
TAATGAGTTGATTTGGTAAAAAAAACGCAAAGGAATCAAGAAGGGGTAAGAAACAAATGAAGATCAGAGGCACAGCAAAACTCTTTAATTGAAGAGCTTT
GATACCATCTTAAATAATGAGAATGGTCATTCAAACCAAGTATTGAGATTGTAATATAGAGAGGAAAAATAGAAAAGCAAAAAGTCTATGTATTATCTGA
ATTCTGCATAATGCATATGCAAATATTTATACATCAAAATTATAACAAAATTAGTTATAATTCTATCTAATCTATCACCAATATACTCTGAATAATAACA
AACAAAAATAATAACAAACAAGATCTTAAAACCTATTAAGATATTAAATCTTAATTGATATTAAATCCTAACAAGATATTAAATCTTAA