« Back to Vigna radiata search


Detailed information on CNT3085191


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Vigna radiataSetaria viridis21.0672.686.09151forward
CNT30532843Vigna radiataEucalyptus grandis25.3824.8680.77182forward
CNT30316236Vigna radiataCorylus avellana29.2945.7587.62210forward
CNT30547471Vigna radiataIpomoea triloba17.8523.6687.5128forward
CNT30512951Vigna radiataJuglans regia39.4736.2884.45283forward
CNT30371838Vigna radiataArabidopsis thaliana38.9121.1581279forward
CNT3019597Vigna radiataCitrullus lanatus34.5933.1685.08248forward
CNT30728649Vigna radiataCorchorus capsularis22.5914.8887.65162forward
CNT30405832Vigna radiataBeta vulgaris33.7530.1782.64242forward
CNT30711584Vigna radiataGlycine max35.2935.9490.91253forward
CNT3045373Vigna radiataPrunus dulcis39.4736.183.75283forward
CNT30636551Vigna radiataCapsicum annuum22.8724.8585.98164forward
CNT30191206Vigna radiataSecale cereale21.212.4283.55152forward
CNT30300473Vigna radiataTriticum aestivum20.9215.584150forward
CNT30224330Vigna radiataHordeum vulgare22.4533.3383.85161forward
CNT30561658Vigna radiataActinidia chinensis38.7723.7682.37278forward
CNT30510505Vigna radiataSolanum lycopersicum34.5922.8484.68248forward
CNT30552635Vigna radiataOryza glaberrima31.2421.5881.7224forward
CNT30143941Vigna radiataMedicago truncatula37.2459.685.77267forward
CNT30441158Vigna radiataAegilops tauschii22.4521.2183.85161forward
CNT30665536Vigna radiataTriticum dicoccoides22.4524.4383.23161forward
CNT30309793Vigna radiataCamelina sativa38.6335.680.51277forward
CNT3059659Vigna radiataArabidopsis lyrata23.9939.6384.3172forward
CNT30263667Vigna radiataBrassica rapa22.8723.286.59164forward
CNT30612508Vigna radiataArabis alpina22.596.3883.33162forward
CNT30448454Vigna radiataSaccharum spontaneum23.018.9584.24165forward
CNT3014085Vigna radiataZea mays33.7539.6783.47242forward
CNT30203835Vigna radiataHelianthus annuus22.5933.7583.33162forward
CNT30716232Vigna radiataMalus domestica golden22.8712.3785.37164forward
CNT30345702Vigna radiataEragrostis tef37.132.9284.59266forward
CNT30361520Vigna radiataSorghum bicolor37.839.6284.87271forward
CNT30596064Vigna radiataOryza meridionalis19.1126.7685.4137forward
CNT30369654Vigna radiataOryza glumipatula27.0622.0580.93194forward
CNT30154011Vigna radiataPrunus persica13.2533.8190.5395forward
CNT30706279Vigna radiataPrunus avium22.8727.0282.93164forward
CNT30119815Vigna radiataCitrus clementina22.8735.7385.37164forward
CNT30332479Vigna radiataDioscorea rotundata12.8332.5185.8792forward
CNT30100260Vigna radiataOryza rufipogon22.1822.1485.53159forward
CNT30575129Vigna radiataOryza barthii31.2427.5281.25224forward
CNT30116094Vigna radiataOryza nivara31.2425.4581.7224forward
CNT3050899Vigna radiataCucumis sativus22.0462.786.08158forward

Expression of CNT3085191

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MQNPMEQQKYIDASTNKKYNKSLTKPQTKLDKILKLRFRKINSANKLKNKYF*

>peptide 2 (37 aa)
MRSFSSDFMVTPSFCSIGHSLSFWSFMQVLMICLMGS*

>peptide 3 (34 aa)
MGQRTSCPNDQRHTVGKLGLMLQPSTCLRNQKTL*

Sequence

>CNT3085191
CCCCTATCGCACTCAATTTATAATTTGATTATTTTGCACCACAAAAATATTGAAATAGTATCTTTCAAGCAAAATTCGCACAAATAGTTCGAACCAACAT
CGATGCAAAATCCTATGGAGCAACAAAAATACATCGACGCAAGCACAAATAAAAAGTACAACAAGTCACTGACAAAACCACAAACAAAACTCGACAAAAT
TTTAAAACTAAGGTTTCGAAAGATAAATTCAGCTAATAAGTTGAAAAATAAATACTTCTAAAATAAAACATTTTAAAGCTTGTCTTCATACTCAGAGAGA
GGAGTCATCTGTTCCTTCAAGCCCTTCCTCTTACGAATATCCGCCACAAGTTGTGCAGCTTGCGATCCAGCCTCCAATGGGTCAGAGGACATCATGTCCC
AATGATCAAAGACACACTGTGGGAAAGCTTGGCCTGATGTTGCAGCCCTCAACGTGCTTGAGAAACCAAAAGACTCTATGACAGGGAGATATGCCTTGAT
GTTGTAGAGTGGGGTACCTGGCCTCTGCATTTCCTCAAACACGTGTCCACGTTTGCATCACCCGCTTCATCAATGCTTTACCCATGAGGTCCTTCTCCTC
AGATTTCATGGTGACACCAAGTTTTTGCAGCATAGGCCACAGCTTATCCTTCTGGTCATTCATGCAAGTGTTAATGATCTGTTTGATGGGCTCATAGCAG
AACTGAACAAACCCACG