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Detailed information on CNT3084834


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672414Vigna radiataSetaria viridis27.7917.8385.98107forward
CNT30520781Vigna radiataSetaria italica27.7916.6185.98107forward
CNT30533721Vigna radiataEucalyptus grandis69.6138.479.48268forward
CNT30516978Vigna radiataJuglans regia29.0916.4285.71112forward
CNT30698134Vigna radiataQuercus lobata29.096.0184.82112forward
CNT30712228Vigna radiataGlycine max78.1859.1488.37301forward
CNT3042792Vigna radiataPrunus dulcis30.6531.9888.98118forward
CNT30172563Vigna radiataTrifolium pratense65.9737.4181.89254forward
CNT3075006Vigna radiataBrassica juncea25.4521.7884.6998forward
CNT30261201Vigna radiataBrassica rapa25.4511.0484.6998forward
CNT30614377Vigna radiataArabis alpina26.233983.17101forward
CNT30454500Vigna radiataSaccharum spontaneum21.5622.9384.3483forward
CNT30135064Vigna radiataLolium perenne28.5719.2682.73110forward
CNT3014188Vigna radiataZea mays21.310.7386.5982forward
CNT30610860Vigna radiataGossypium raimondii15.322088.1459forward
CNT30217087Vigna radiataKalanchoe fedtschenkoi35.3213.0980.88136forward
CNT30344813Vigna radiataEragrostis tef27.7920.4685.05107forward
CNT30620323Vigna radiataCajanus cajan77.416.6889.6298forward
CNT30483616Vigna radiataChara braunii22.0821.2583.5385forward
CNT30644515Vigna radiataCannabis sativa26.2317.4788.12101forward
CNT30578384Vigna radiataOryza barthii27.7927.385.98107forward
CNT30582394Vigna radiataEchinochloa crusgalli2020.6488.3177forward
CNT30557050Vigna radiataPanicum hallii27.7928.1686.92107forward
CNT30112090Vigna radiataFicus carica40.787.6785.99157forward
CNT30726872Vigna radiataLupinus angustifolius56.629.8182.57218forward

Expression of CNT3084834

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLRIATSPPAAREPAAPAYSVFLRGPALTNGPTRR*

>peptide 2 (38 aa)
MGRRGGSRGPGDQRAGCYRRFETSDEWVTVDGLNDLIRG

>peptide 3 (36 aa)
EVGPNNTRNASEEEAPGELGPSIGGLELIGLLLAAR*

Sequence

>CNT3084834
AGGAAGTAGGCCCAAATAACACCCGAAATGCCTCCGAAGAAGAAGCCCCCGGTGAACTTGGCCCATCCATCGGCGGTCTGGAGCTGATCGGGCTGCTTCT
TGCGGCCCGTTAAGGTCAGGGAAGGGGCCGTGGATGCGTCTCCCTCGTTGAACGATGAGATCCCGTAGATTGTGAGGCAGATGCTCAGGATCGCCACAAG
CCCACCGGCAGCGAGAGAGCCCGCTGCGCCAGCGTACTCGGTGTTCCTGAGAGGGCCGGCCTTGACGAATGGGCCGACGAGGAGGTAGCCGTGGGCCAGG
CGATCAAAGGGCTGGATGTTACCGGCGTTTCGAGACTTCCGATGAATGGGTCACCGTTGATGGGCTGAATGACTTGATACGTGGG