CANTATAdb - search

Detailed information on CNT308481

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30521727	Zea mays	Setaria italica	44.83	40.88	89.23	260	forward
CNT30669606	Zea mays	Triticum dicoccoides	42.07	44.77	86.48	244	forward
CNT30344603	Zea mays	Eragrostis tef	27.59	31.87	88.75	160	forward
CNT30102355	Zea mays	Oryza rufipogon	40.69	39.86	84.75	236	forward
CNT30580110	Zea mays	Echinochloa crusgalli	45.17	39.1	90.46	262	forward

Expression of CNT308481

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MMMSPMLLCHGSARWEARWAGRGWPGIHSADMVTRPEVVALAQNGARRPDRDDGASRLGTPTALQLLSPLDDAITIAASADPSWSGREGGRTSGV*

Sequence

>CNT308481
GTTATCAAAGGTCTCGTATGTATTTTCTCCGTTTTGAGCTAAATTTCCCCTGGTTAGGCTCAGAAATAACCTTGGGATTCAGCTAACAAACCAGTTTATA
TTTGATACAGACAAGACTACAAGAGTAGCCGCTACTTAATAACATAAGCTTTACATTACGAGGGTTTAATTTCCGGGCGGGAAGTCACCGTCGTCGCTCG
TTGTACAGGCAGGGCCTAGTCGTACACAGGAAACAGCAACCAGCAGCTGAGCTGAGCTCAAGGGGAGATTGATCTGGGGATGATGATGTCGCCGATGTTG
TTGTGCCACGGGTCGGCGAGGTGGGAGGCGAGGTGGGCAGGGCGTGGCTGGCCGGGCATCCACTCCGCGGACATGGTGACGCGGCCAGAGGTGGTGGCGT
TGGCGCAGAACGGCGCCAGGCGGCCGGACCGGGACGACGGCGCCAGCAGGCTGGGCACGCCCACGGCGCTGCAGCTCCTCAGCCCGCTCGACGACGCCAT
CACCATTGCTGCTTCCGCTGATCCTAGCTGGTCAGGCAGAGAGGGAGGGAGAACAAGTGGCGTTTGAGAGCCGAGTAGAA