« Back to Vigna radiata search


Detailed information on CNT3084586


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381982Vigna radiataManihot esculenta8.0122.9483.33114forward
CNT30712649Vigna radiataGlycine max14.4828.6592.72206forward
CNT3096857Vigna radiataSolanum tuberosum4.8524.7386.9669forward
CNT30242094Vigna radiataAvena sativa7.127.4585.15101forward
CNT30662885Vigna radiataTriticum dicoccoides4.0825.4487.9358forward
CNT301194Vigna radiataZea mays7.120.2487.13101forward
CNT30619970Vigna radiataCajanus cajan14.4853.6587.86206forward
CNT30322744Vigna radiataAsparagus officinalis4.9220.719070forward
CNT3050967Vigna radiataCucumis sativus7.6622.0683.49109forward

Expression of CNT3084586

Peptides detected in this lncRNA

>peptide 1 (31 aa)
ITPYRFNNKIISLQSSRILYHFCFIYPYQVT*

>peptide 2 (68 aa)
MINSFSFFFLVQSSSLDTLFTVAMIDRLRVNKFELCHKLEKRGKHFNSTEAAVKWYIQPIMIHPWWTR*

>peptide 3 (31 aa)
MVHSANNDTSMVDQVRKRETERGCTNDDNLT*

Sequence

>CNT3084586
TATTACACCATACCGCTTCAATAACAAAATAATATCTTTACAATCTTCTCGTATTCTCTACCATTTTTGCTTTATATATCCTTATCAGGTCACATAGTAG
CTCATATATATTTTTTAGGAAAAAGATGTAAAGCTATGTGTTTCAAGGAGAATAACTGACCAAGTAGTCACGGTACAAGATAAAATATACACGATAACTT
CACATATTGGAGGCCTCTGAAAGGGTGCATTATTCCTAAACAAGGAGACAAACTAGATTTCTGGAAAAGTTATTGATGAGCATATATAACACTGACGATA
GATGCCTAGCTATATGATCCTGTTGAATCTGGTTTAGTTTCTTTCTCTAATCAACGTTCTACAATCATTCTTCCTGGCTTTTAATAGTGTTATACTGTGG
TCGGTACTCGTACGTCTTCTTTAGGGAAGTGAATTACCCATCCACGCTGGTGGACCCACTCTTTGCATGTGCTTCAACGATTCTCCTTTTAAGAACTTTT
GTCGCATACCATGATTAACTCTTTTTCATTTTTTTTTTTAGTTCAATCTTCTTCTCTGGATACTTTGTTCACTGTCGCAATGATTGACAGATTAAGGGTT
AATAAATTCGAACTGTGCCACAAATTAGAAAAAAGAGGAAAGCATTTCAATTCGACAGAAGCAGCAGTGAAATGGTACATTCAGCCAATAATGATACATC
CATGGTGGACCAGGTGAGAAAGAGAGAGACAGAGAGAGGATGCACAAATGATGATAATTTAACTTAAAAGAGAACATGATCATCAACCATCCAACCAAAG
ATCAACGTCCACCGATTCAACACGAAAGGAACAACCCGCGAAAGTAGAATGAAGAGAAACACAAGGAAAAAAAAACATACACAGAAGAAAATCGAAGGTG
AAATTCAATAATAGACAATTTTTTTTTTTTGTTTATTTTTCTGATTTCGGGTCTAGTAGTCAGTGGTTGGGAGCTGCTCGTGGGTGTGGCTGATGAAGAC
GACCTCGTAGATGACTCCGGCGATGCCACCACCGATGAGAGGGCCGACCCAGTAGATCCAGTTGTTTTCCCAGGTCCAGCTAACAACGGCAGGTCCGAAT
GTGACGGCAGGGTTCATGGCTGCTCCGGAGAAGGCCGAATGCGTGGGCGATGGAGGCGGAGAGGAGTCCGGCAGGTGAGGTGGCGGCGTTGTCAGTGAGC
TTGTTGTAGGCGATGCCGGAGCCTGAGCCGGCGAACACGAAGATGAAGGTGGAGATGAACTCGGCCAAAGCCGCCTTCAACGTGTCGGGGTGAGTGGCCT
CCTCGGGCCTTCCGATGGCGATGTTTCTGATCGGCATCTTCAATCGACGGTGGTGATGATTACGACTGGTGAAAGATGAAGTGAACACCGAGATCACTCA
CTCAAATCACTCTCTGTTTCGCT