« Back to Vigna radiata search


Detailed information on CNT3084571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522256Vigna radiataSetaria italica11.2729.784.89139forward
CNT30575580Vigna radiataOryza barthii6.0822.3990.6775forward

Expression of CNT3084571

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVHSANNDTSMVDQVRKRETERGCTNDDNLT*

>peptide 2 (30 aa)
MTPAMPEPEPANTKMKVEMNSAKAAFNVSG*

>peptide 3 (31 aa)
ITPYRFNNKIISLQSSRILYHFCFIYPYQVT*

>peptide 4 (68 aa)
MINSFSFFFLVQSSSLDTLFTVAMIDRLRVNKFELCHKLEKRGKHFNSTEAAVKWYIQPIMIHPWWTR*

Sequence

>CNT3084571
TATTACACCATACCGCTTCAATAACAAAATAATATCTTTACAATCTTCTCGTATTCTCTACCATTTTTGCTTTATATATCCTTATCAGGTCACATAGTAG
CTCATATATATTTTTTAGGAAAAAGATGTAAAGCTATGTGTTTCAAGGAGAATAACTGACCAAGTAGTCACGGTACAAGATAAAATATACACGATAACTT
CACATATTGGAGGCCTCTGAAAGGGTGCATTATTCCTAAACAAGGAGACAAACTAGATTTCTGGAAAAGTTATTGATGAGCATATATAACACTGACGATA
GATGCCTAGCTATATGATCCTGTTGAATCTGGTTTAGTTTCTTTCTCTAATCAACGTTCTACAATCATTCTTCCTGGCTTTTAATAGTGTTATACTGTGG
TCGGTACTCGTACGTCTTCTTTAGGGAAGTGAATTACCCATCCACGCTGGTGGACCCACTCTTTGCATGTGCTTCAACGATTCTCCTTTTAAGAACTTTT
GTCGCATACCATGATTAACTCTTTTTCATTTTTTTTTTTAGTTCAATCTTCTTCTCTGGATACTTTGTTCACTGTCGCAATGATTGACAGATTAAGGGTT
AATAAATTCGAACTGTGCCACAAATTAGAAAAAAGAGGAAAGCATTTCAATTCGACAGAAGCAGCAGTGAAATGGTACATTCAGCCAATAATGATACATC
CATGGTGGACCAGGTGAGAAAGAGAGAGACAGAGAGAGGATGCACAAATGATGATAATTTAACTTAAAAGAGAACATGATCATCAACCATCCAACCAAAG
ATCAACGTCCACCGATTCAACACGAAAGGAACAACCCGCGAAAGTAGAATGAAGAGAAACACAAGGAAAAAAAAACATACACAGAAGAAAATCGAAGGTG
AAATTCAATAATAGACAATTTTTTTTTTTTGTTTATTTTTCTGATTTCGGGTCTAGTAGTCAGTGGTTGGGAGCTGCTCGTGGGTGTGGCTGATGAAGAC
GACCTCGTAGATGACTCCGGCGATGCCGGAGCCTGAGCCGGCGAACACGAAGATGAAGGTGGAGATGAACTCGGCCAAAGCCGCCTTCAACGTGTCGGGG
TGAGTGGCCTCCTCGGGCCTTCCGATGGCGATGTTTCTGATCGGCATCTTCAATCGACGGTGGTGATGATTACGACTGGTGAAAGATGAAGTGAACACCG
AGATCACTCACTCAAATCACTCTCTGTTTCGCT