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Detailed information on CNT3084565


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 2e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Vigna radiataSetaria italica10.0622.6780.59170forward
CNT30530404Vigna radiataEucalyptus grandis2095.2180.18338forward
CNT30316147Vigna radiataCorylus avellana2045.3782.25338forward
CNT30703138Vigna radiataQuercus lobata23.4975.7683.63397forward
CNT30499549Vigna radiataCoffea canephora17.9962.0481.58304forward
CNT30615836Vigna radiataSesamum indicum6.8630.2984.48116forward
CNT30277485Vigna radiataChenopodium quinoa23.7947.1378.86402forward
CNT3021247Vigna radiataCitrullus lanatus21.639.6382.47365forward
CNT30729539Vigna radiataCorchorus capsularis2050.386.09338forward
CNT3068683Vigna radiataQuercus suber23.9682.3283.7405forward
CNT30524728Vigna radiataPhaseolus vulgaris31.9510092.04540forward
CNT30486152Vigna radiataOlea europaea15.3828.7383.08260forward
CNT30506399Vigna radiataNicotiana attenuata14.8575.8381.67251forward
CNT30636701Vigna radiataCapsicum annuum17.8773.4878.15302forward
CNT3098150Vigna radiataSolanum tuberosum15.6253.8879.55264forward
CNT30289293Vigna radiataTriticum aestivum8.2846.0582.86140forward
CNT30223417Vigna radiataHordeum vulgare12.3792.0780.86209forward
CNT30590847Vigna radiataMusa acuminata8.5231.5180.56144forward
CNT30539234Vigna radiataBrassica napus20.4137.780.58345forward
CNT30511842Vigna radiataSolanum lycopersicum15.6257.6479.55264forward
CNT30143836Vigna radiataMedicago truncatula23.9669.4781.23405forward
CNT30261302Vigna radiataBrassica rapa20.1865.9680.35341forward
CNT30447453Vigna radiataSaccharum spontaneum12.7237.5278.6215forward
CNT30131528Vigna radiataLolium perenne15.2755.9779.84258forward
CNT30653881Vigna radiataRosa chinensis2031.6585.5338forward
CNT30718631Vigna radiataMalus domestica golden14.9744.0883.4253forward
CNT30339698Vigna radiataEragrostis tef20.2427.6979.82342forward
CNT30477892Vigna radiataArabidopsis halleri20.332.0682.8343forward
CNT30360575Vigna radiataLactuca sativa20.1856.5580.35341forward
CNT30424172Vigna radiataPapaver somniferum18.9945.9979.44321forward
CNT30570592Vigna radiataVitis vinifera14.3875.2383.13243forward
CNT30645151Vigna radiataCannabis sativa20.0635.5778.76339forward
CNT3055709Vigna radiataAmborella trichopoda12.3731.9680.86209forward
CNT30319856Vigna radiataAsparagus officinalis8.9954.2980.26152forward
CNT30579496Vigna radiataEchinochloa crusgalli15.5667.2679.09263forward
CNT30497454Vigna radiataDigitaria exilis13.4361.0279.74227forward
CNT30604168Vigna radiataOryza punctata7.2244.283.61122forward
CNT30174824Vigna radiataVigna angularis12.372278.95209forward
CNT30337932Vigna radiataCynara cardunculus20.8342.9377.84352forward
CNT30726386Vigna radiataLupinus angustifolius19.5336.7183.94330forward
CNT3064271Vigna radiataSelaginella moellendorffii13.2540.7379.91224forward
CNT3050773Vigna radiataCucumis sativus19.8259.6179.4335forward

Expression of CNT3084565

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVDLVYFQEERLNDVVSDKFEIRIPKMVHHVFFPSCEEIVDHDHAVSSANQPIH*

>peptide 2 (45 aa)
MESLLAEEVAEGEPWLLWLGGIGVVDRLGLVSSENQSRSHFRWFN*

>peptide 3 (43 aa)
MNAEKAGSESAGAACLTFSDPKVTAYKALRSFYALTCFVPSIL*

>peptide 4 (35 aa)
MDIPREFSQGVENVVLLRSPTCLDLGFDSPFLHPT*

>peptide 5 (33 aa)
MRRRRGVKVLVLPASPFQIQRSLLIKLYEVSML*

Sequence

>CNT3084565
ACCCACCCTAGTTAAAGGTAGACTGTGGTTCTAATAATTGTATCCATGATGTGGACTAGTACAAAACTAAAAATTTCAGTTCCAGTCAAAAAAGACTACC
GAGCTCTGAAAAGTTAACTAAAATTATCTTTGGTTTCTTCTTTAGGTTGGTTCTGTGATCTCTATTATTTCTTTCCTTTCTGTTTTACCACACCAAACAG
AATGTTTGGTGCTGACCCTTCTACGTTGTAGCTTTGTAGGTAAGCCGTTAAAGCACCCTCCTCACCGATAACGCCAAGTACCAACCAACCATTCCTATCG
ATCGACGATAAGGATTTTAGTTGTTACGATCGTTCAAATTGAAGTTGTGAACAGAGCATCAGAGACCAACGAAGATCTGAACCCTGGAATCATGGATATC
CCACGAGAATTTTCCCAGGGTGTGGAAAACGTGGTCCTCTTAAGAAGTCCCACGTGTCTCGATTTGGGTTTTGACTCACCATTTCTCCACCCCACCTAGA
AAAAGTACCAAGTTTGAAAAGGAAAACACAGACAACGCTGTGCTGTCGCAACGCCACGGTTGCCACGTGACACTCAATCACTCTAATTTAAACAAACCAG
TAACCAACCATTGCAGAGCATGTGTGAGAGTCTAACACGCTAACGTACATCCCAATTATCAAAAAGAGAAAGAGAGAGAACTGACCAATGGGATTGACGT
TGCCCCAATAAGTCTCCTTCTGAGGGTGTTGCAGAGGATCTCCGTAAACCTCGCTGGTACTGGTTAAAAGGAACCTCGCGCCAACCCTTTTAGCAAGCCC
CAGCATGTTCAACGTGCCCACCACGTTGGATATAATAGTCTTGACGGGATTGAACTTGTAATGGACAGGTGAGGCAGGGCAAGCGAGATGGTAGATCTGG
TCTACTTCCAAGAGGAGAGGCTCAACGACGTCGTGTCGGATAAGTTCGAAATTCGGATTCCCAAAATGGTGCATCACGTTTTCTTTCCTTCCTGTGAAGA
AATTGTCGACCACGATCACGCTGTCTCCTCGGCTAATCAACCGATCCACTAAGTGGGACCCGACAAACCCGGCCCCGCCAGTCACCACCACCCGGCGCGC
TTTTCGTTTGATCCCTAGAGGGATCCTCCCCGAGGAATGCACCGCCACGTCATAGGCTCGGGTGTTGGTAGTGATCCAGTGCGTTAAGTCGTGGCGTGCG
GAGAAAGAAGCGGGGAGTGGGTCGTGGGCTCGGGCGGGAGGAGAAGAGACGGAGGGGAAGAGGAGGAAGAAGACGGAGGCGAGGAGAATGCCGAAGAAGA
GGAAATGGAGTCGCTGCTCGCGGAAGAAGTAGCGGAGGGAGAACCATGGCTTCTGTGGCTTGGCGGAATAGGCGTCGTTGACAGGTTGGGCCTCGTGTCC
TCGGAAAACCAATCCCGAAGCCATTTTCGCTGGTTCAATTGACAGTAATACTTATCTGTTGCTGGTGTTATTGTTGTAGTATTGGTTATGGTTGAATGTG
TGGCTGTGAATTTGATGTGAAAAGACGAGAATGAATGCGGAGAAGGCGGGGAGTGAAAGTGCTGGTGCTGCCTGCCTCACCTTTTCAGATCCAAAGGTCA
CTGCTTATAAAGCTCTACGAAGTTTCTATGCTCTAACGTGCTTCGTTCCTTCTATTCTGTAAAACGCCACTACACTACAGACACATTTTC