Detailed information on CNT3084535


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 9e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524765Vigna radiataPhaseolus vulgaris95.1851.7593.01415forward
CNT30708652Vigna radiataGlycine max65.3791.9488.77285forward
CNT30247019Vigna radiataAvena sativa21.797.7385.2695forward

Expression of CNT3084535

Peptides detected in this lncRNA

>peptide 1 (63 aa)
GGGHEGQEEGGHHGTQELGDDVDNTAEEGDGGVHVTSGDVGADGDGDKKAECVGDGGGEESGR*

>peptide 2 (35 aa)
MLAPTETATKRPNAWAMEAERSPAGEVAALSVSLL*

Sequence

>CNT3084535
GGAGGAGGTCACGAAGGCCAGGAGGAGGGAGGCCACCACGGAACCCAGGAGCTGGGCGATGATGTAGACAATACCGCGGAGGAAGGTGACGGCGGGGTTC
ACGTGACCTCCGGAGATGTTGGCGCCGACGGAGACGGCGACAAAAAGGCCGAATGCGTGGGCGATGGAGGCGGAGAGGAGTCCGGCAGGTGAGGTGGCGG
CGTTGTCAGTGAGCTTGTTGTAGGCGATGCCGGAGCCTGAGCCGGCGAACACGAAGATGAAGGTGGAGATGAACTCGGCCAAAGCCGCCTTCAACGTGTC
GGGGTGAGTGGCCTCCTCGGGCCTTCCGATGGCGATGTTTCTGATCGGCATCTTCAATCGACGGTGGTGATGATTACGACTGGTGAAAGATGAAGTGAAC
ACCGAGATCACTCACTCAAATCACTCTCTGTTTCGC