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Detailed information on CNT3084498


BLAST search results

BLAST vs Swiss-Prot:
sp|P42067|TIP1_MEDSA, E-value = 8e-68

BLAST vs NONCODE:
NONGMAT001209, E-value = 2e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628528Vigna radiataVigna unguiculata37.0645.2197.76401forward
CNT30176366Vigna radiataVigna angularis41.8794.5798.23453forward

Expression of CNT3084498

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MAAPEKAPPNKMLAPTMKPMAMGAMVPKLPLLGSTAVA*

>peptide 2 (31 aa)
MKRNTRKKKHTQKKIEVVGSCSWVWLMKTTS*

>peptide 3 (31 aa)
MVHSANNDTSMVDQVRKRETERGCTNDDNLT*

>peptide 4 (35 aa)
MLAPTETATKRPNAWAMEAERSPAGEVAALSVSLL*

Sequence

>CNT3084498
ATGGTACATTCAGCCAATAATGATACATCCATGGTGGACCAGGTGAGAAAGAGAGAGACAGAGAGAGGATGCACAAATGATGATAATTTAACTTAAAAGA
GAACATGATCATCAACCATCCAACCAAAGATCAACGTCCACCGATTCAACACGAAAGGAACAACCCGCGAAAGTAGAATGAAGAGAAACACAAGGAAAAA
AAAACATACACAGAAGAAAATCGAAGTGGTTGGGAGCTGCTCGTGGGTGTGGCTGATGAAGACGACCTCGTAGATGACTCCGGCGATGCCACCACCGATG
AGAGGGCCGACCCAGTAGATCCAGTTGTTTTCCCAGGTCCAGCTAACAACGGCAGGTCCGAATGTGACGGCAGGGTTCATGGCTGCTCCGGAGAAGGCCC
CACCCAACAAAATGTTAGCGCCAACGATGAAACCAATGGCGATGGGAGCAATGGTTCCCAAACTACCCCTCTTGGGGTCAACGGCGGTAGCGTAGACAGT
GTACACCAAACCGAAAGTCAACACGATCTCCAACACCAAAGCGTTACCCACTCCAACTCCAGCTGAGAGTGCAAATGCGGGAACGGTCTGCAAGCATCGG
AACAAAACTCGTATTAGTTCAACTTAAAAGTTAGTTATGTAAAGCAAGTAACGGTAATAACGGTCTTACGGAGGAGGTCACGAAGGCCAGGAGGAGGGAG
GTGATGTTGCCTCCGACGAAGGCGCCGAAGGTGACGGCGGGGTTCACGTGACCTCCGGAGATGTTGGCGCCGACGGAGACGGCGACAAAAAGGCCGAATG
CGTGGGCGATGGAGGCGGAGAGGAGTCCGGCAGGTGAGGTGGCGGCGTTGTCAGTGAGCTTGTTGTAGGCGATGCCGGAGCCTGAGCCGGCGAACACGAA
GATGAAGGTGGAGATGAACTCGGCCAAAGCCGCCTTCAACGTGTCGGGGTGAGTGGCCTCCTCGGGCCTTCCGATGGCGATGTTTCTGATCGGCATCTTC
AATCGACGGTGGTGATGATTACGACTGGTGAAAGATGAAGTGAACACCGAGATCACTCACTCAAATCACTCTCTGTTTCGCT