Detailed information on CNT3084371


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Vigna radiataCorylus avellana18.223.4592.7783forward
CNT30379495Vigna radiataManihot esculenta16.4523.298875reverse complement
CNT3044614Vigna radiataPrunus dulcis16.8920.4889.6177reverse complement
CNT30158859Vigna radiataPistacia vera14.6923.3492.5467forward
CNT30715507Vigna radiataMalus domestica golden17.5425.8987.580reverse complement
CNT30154558Vigna radiataPrunus persica16.8925.1689.6177reverse complement
CNT3030049Vigna radiataTheobroma cacao16.2324.189.1974reverse complement
CNT3058749Vigna radiataAmborella trichopoda12.520.8892.9857reverse complement
CNT3026903Vigna radiataPopulus trichocarpa16.672592.1176reverse complement

Expression of CNT3084371

Peptides detected in this lncRNA

>peptide 1 (33 aa)
DCSRARLTKLDWDWRYSSLLSLHCQEPEVVAAL*

>peptide 2 (43 aa)
IVQEQGSPSLIGTGGTAACYPSTAKSRRWSLLCETSLTLCPPV*

>peptide 3 (32 aa)
MWDFQMASLELETETCSFPRLFSPWYDMIQRNT

Sequence

>CNT3084371
GATTGTTCAAGAGCAAGGCTCACCAAGCTTGATTGGGACTGGAGGTACAGCAGCCTGTTATCCCTCCACTGCCAAGAGCCGGAGGTGGTCGCTGCTCTGT
GAAACCAGCCTCACGCTGTGCCCTCCTGTCTAGGAAGCAGGAAACCTTTGCCTTCGCAAAGATCCCATGTCTCAACTCCTGACTTGGAGTGGGCAAGCCA
GCAAGATGCAGCCTCCAGACCAGCTTAGCAAGCCATAGCCTTGTTCAATCACCTTGATGCCCCCACTAAGGTTACAAGCTGACGTTACCCAGCTCGGCGA
ACTGATGTGTTTGTCAGAAGATTTATAAAGACTAATTTGTATACTATTCTGAGCAATGTGGGACTTCCAGATGGCGAGTCTTGAGTTGGAAACTGAGACT
TGTTCCTTTCCGCGTCTATTTTCTCCATGGTATGATATGATACAGCGTAATACATT