CANTATAdb - search

Detailed information on CNT3084275

BLAST search results

BLAST vs Swiss-Prot:
sp|O24463|PBF_MAIZE, E-value = 1e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30179293	Vigna radiata	Secale cereale	13.02	42.59	82.61	115	forward
CNT30286941	Vigna radiata	Triticum aestivum	12.68	39.44	83.04	112	forward
CNT30458968	Vigna radiata	Saccharum spontaneum	10.42	23.35	91.3	92	forward
CNT3068006	Vigna radiata	Leersia perrieri	13.02	34.53	86.96	115	forward

Expression of CNT3084275

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MYILHFRAEMEGENLRCVVCGRKKERRVCFSGCV*

>peptide 2 (56 aa)
MECISCISGQKWKVKICGVWCVEERKKEEFVSLGVSESVLCFGRSVSLLKKVWGIV*

>peptide 3 (74 aa)
MFWEKCQFVEEGMGNSVMEKKRKKESLGLTNIPADHCTARLVSLSSIFLIFFRVIDRNDLGHRWATTHHAKILIC

Sequence

>CNT3084275
TGCAATTCCCAAACCCAAACCCCAATGCTTCGTTATTTGAAGCAATGAGGGGTTATTAGCGTTAGCGAACAGCTTCGACTCGCGGACGTTGTCCAGGAAC
AAAGCGTTGCTAGACAAAGTGTTCGATGTCGGCGCCGACATCGCCTCCGTGACGGTTAGGGTGGAGCTTTCGCTGCTGGAGTGGGAGTTCGAGTTGCGCT
CCCGCTCCGCAGCAGACGGCGTCGTGGACGCGTTTGCCGGAGCGATCTGCGAGGAAGGGGAAGGATTGTTGTTGTTGCTGCTGCTATCGTTGGTGTTGTG
GGCGGTGGTTTTTGGTTTGTTGGAGCGTTTCGACTTGCGGCAACCACCGCCGACGGGGACATTGCGAAGGACGCCGCCTTTGGTCCAGTAGCGGCGGCAG
TTCTTGCAGAAATGGCGTGGCTGGGAGAGGTTGTAGTTGTTGTAGTAGCAGAACTTGGTGTTGAGTGAGTCACAGCGCGGACACTTTAGCGGCTGGTGGT
GGTGGTGGTGCTGTCTGAGCCTGCGGTCACCGCCGCAGATGGAATGTATATCCTGCATTTCCGGGCAGAAATGGAAGGTGAAAATTTGCGGTGTGTGGTG
TGTGGAAGAAAGAAAGAAAGAAGAGTTTGTTTCTCTGGGTGTGTCTGAGAGTGTACTATGTTTTGGGAGAAGTGTCAGTTTGTTGAAGAAGGTATGGGGA
ATAGTGTGATGGAGAAGAAGAGAAAGAAAGAGTCTTTGGGACTGACAAATATCCCTGCAGACCACTGCACTGCTCGTCTCGTTTCGCTATCTTCCATTTT
TCTAATATTTTTCAGGGTAATTGACCGAAACGACCTTGGCCACCGGTGGGCCACCACACACCATGCCAAAATACTAATATGTC