Detailed information on CNT3084173


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639595Vigna radiataNymphaea colorata19.6829.0381.02137forward
CNT30628366Vigna radiataVigna unguiculata89.0843.3983.55620forward
CNT30221496Vigna radiataHordeum vulgare7.3325.3794.1251forward
CNT30144739Vigna radiataMedicago truncatula19.6829.5382.48137forward
CNT30611972Vigna radiataArabis alpina11.2132.7788.4678forward
CNT30365573Vigna radiataSorghum bicolor29.3157.7981.37204forward
CNT3026679Vigna radiataPopulus trichocarpa25.8615.1881.67180forward
CNT30103950Vigna radiataOryza rufipogon20.8342.484.14145forward
CNT3065844Vigna radiataSelaginella moellendorffii11.6423.2187.6581forward

Expression of CNT3084173

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MMVSTIWNSALSGPPPGPQSRARSVHHQYSWRVSPFQAN

Sequence

>CNT3084173
CCAACCTCTTCCTTTAAAAAATCATACAACAACTGATAAAAAAAGCAGTTAGTTTGGGTGAAGAGTTCAAAATTTGATTCCGATTTTGAATGATATAGCA
TGTAATTGGACTCAAAAGCCAGTTAACAGTAAAATTCCGTGTAAATAAGTTACCTAGAGATGTTTCAAATCAATTCCTAGATACCAATCCAAATTTCTTT
CAGAACATTAATCAATCAGTTAACAGGTTAAATAAATCCATTTCACCAATGCCACAAATCCCATTAAAACCGACAGATCTGAATCGAGCTCAACATTAGT
TAATCAGTTAACAGATTCAAGAATCCACTTCACAGCATTAAAACAGACAGATCTGAATCGAGCTCAACGTCTAAACACTAGAAAAGTAACAGATCTGAAA
AACACAATACCTTGCTCTTGGTGACAGAGTCATTGACATTAATAGCAGGGAACAGAAGACTCCCACTAGCCTGCATCTGATACAGCCTCTTCACACCAGT
GGTAGTCTCCTCAGAAACTCCAACAATACGCTCCTTCATCTTGCGGTACCTGGTGGGGTCGGTCTTCAACCCATCTCTGATGATGGTAAGCACGATCTGG
AACTCAGCGTTGTCAGGACCGCCGCCGGGGCCCCAGTCAAGGGCGCGCTCAGTGCACCACCAGTACTCCTGGAGGGTCTCTCCCTTCCAGGCGAAC