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Detailed information on CNT3083932


BLAST search results

BLAST vs Swiss-Prot:
sp|P00865|RBS1_SOYBN, E-value = 5e-46

BLAST vs NONCODE:
NONCQUT001608, E-value = 5e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30620550Vigna radiataCajanus cajan25.3617.785.38212forward
CNT30705707Vigna radiataPrunus avium23.0917.1382.9193forward

Expression of CNT3083932

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MVTNNGNLVAWWLVGNETDALNLTNTVKSNDTDEAVGVESPGLSKLLQNLRRISAAIHRQLPHGPVPSIIVSR*

Sequence

>CNT3083932
GAAATCAGAAGTAAAAAATATAGGATGATGAATCTCAAAAAGCAATAGCAATATAGAATTGGTTCGATCCCCAGGCTCGTTTGTATGAAGAGAGCATCTG
TTAGGAGATGTCAATTCATTAAATATATCAAATATATCTCCATACATCAAGGGATTAAGCTCTAGCTTTCCACAGAAGATATTCCGGACAACAAAAAGAG
AAAACGAAATGGAAATTTGGTTTAAGTACAAACAAACAAAGTGGGATGGTTACAAATAATGGAAACTTAGTAGCCTGGTGGCTTGTAGGCAATGAAACTG
ATGCACTGAACTTGACGAACACTGTCAAATCCAACGATACGGACGAAGCCGTCGGGGTAGAGAGTCCTGGCCTCTCGAAGCTCCTTCAGAACCTGAGAAG
AATCAGTGCAGCCATACATAGGCAGCTTCCACATGGTCCAGTACCTTCCATCATAGTATCCAGGTGACCTGTTGTTCTCACGGTGTGGGAAAGCGTCCTA
TAAACTCAAAACTCATATCATTACTATCAAAACTCATAACTGTTAAAAAATAACTGATTCACACAAATAATTTTACTCTTCGATCCATTGTTGGTTACTC
TGTTCCAAGAAATTTACCTTATGGCTCAACTCGAATTCCAAACAAGGGATCCATCCACTCCTAAGAAGAATCAGTGCAGCCATACATAGGCAGCTTCCAC
ATGGTCCAGTACCTTCCATCATAGTATCCAGGTGACCTGTTGTTCTCACGGTGTGGGAAAGCGTCCTATAAACTCAAAACTCATATCATTACTATCAAAA
CTCATAACTGTTAAAAAATAACTGATTCACACAAAT