Detailed information on CNT308389


BLAST search results

BLAST vs Swiss-Prot:
sp|P50249|SAHH_PHASS, E-value = 4e-36

BLAST vs NONCODE:
NONGMAT001730, E-value = 2e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628366Zea maysVigna unguiculata71.110.8582.58155forward
CNT30221157Zea maysHordeum vulgare52.7554.7686.96115forward
CNT30587418Zea maysMusa acuminata70.6420.2989.61154forward
CNT30144739Zea maysMedicago truncatula34.8616.3888.1676forward
CNT30435910Zea maysAegilops tauschii87.6123.9689.01191forward
CNT30659902Zea maysTriticum dicoccoides69.7249.3588.82152forward
CNT30681317Zea maysTriticum urartu24.7711.0290.7454forward
CNT30720265Zea maysTriticum spelta33.0326.4791.6772forward
CNT30365159Zea maysSorghum bicolor60.0938.8794.66131forward

Expression of CNT308389

Peptides detected in this lncRNA

>peptide 1 (71 aa)
QEHQRTSAPSAVRVSMRTAVWMVMWRDPEILAPAKGLDGPNSARHAMRPGISTSASSISRRPKRENSRIGSG

>peptide 2 (71 aa)
AGAPADLGAERGEGLDEDGGLDGHVERPRDPSAGEGLGRAELGAARHEAGHFDLGQLNLEAAEEGELANWIW

Sequence

>CNT308389
TGCAGGAGCACCAGCGGACCTCGGCGCCGAGCGCGGTGAGGGTCTCGATGAGGACGGCGGTCTGGATGGTCATGTGGAGAGACCCCGAGATCCTAGCGCC
GGCGAAGGGCTTGGACGGGCCGAACTCGGCGCGGCACGCCATGAGGCCGGGCATTTCGACCTCGGCCAGCTCAATCTCGAGGCGGCCGAAGAGGGAGAAC
TCGCGAATTGGATCTGGG