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Detailed information on CNT3083811


BLAST search results

BLAST vs Swiss-Prot:
sp|P00865|RBS1_SOYBN, E-value = 7e-78

BLAST vs NONCODE:
NONCQUT001608, E-value = 8e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512567Vigna radiataJuglans regia8.2125.685.98107forward
CNT30279728Vigna radiataChenopodium quinoa15.8727.9483.57207forward
CNT3020258Vigna radiataCitrullus lanatus14.827.3480.31193forward
CNT3069740Vigna radiataQuercus suber16.7924.1780.82219forward
CNT30525413Vigna radiataPhaseolus vulgaris17.3329.0988.94226forward
CNT30629673Vigna radiataVigna unguiculata29.9847.2887.98391forward
CNT30710856Vigna radiataGlycine max16.8721.4288.64220forward
CNT30235444Vigna radiataBrassica oleracea7.5936.884.8599forward
CNT30146094Vigna radiataMedicago truncatula8.2121.0284.11107forward
CNT30312343Vigna radiataCamelina sativa7.3623.0883.3396forward
CNT30605275Vigna radiataGossypium raimondii6.3727.3986.7583forward
CNT30355748Vigna radiataLactuca sativa14.7239.0280.73192forward
CNT3038822Vigna radiataCucumis melo7.2121.1290.4394forward
CNT30176139Vigna radiataVigna angularis53.6852.0888.14700forward
CNT30335392Vigna radiataCynara cardunculus16.7926.8780.37219forward

Expression of CNT3083811

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTKLLLLLAIYNTVISSLLIQWFQMKGIRS*

>peptide 2 (52 aa)
MAQLEFQTRDPSTPKKVVYFLTQLFLSEVWQVRESLELLLPNCWPHLPSIIS*

>peptide 3 (70 aa)
MHCTLPPLFATEVMSLFVFLVGNPPKDFSPVNGATIPAAPARLTVVTAGEEIIDEAISFTFLNHLQTSAQ*

>peptide 4 (73 aa)
MVTNNGNLVAWWLVGNETDALNLTNTVKSNDTDEAVGVESPGLSKLLQNLRRISAAIHRQLPHGPVPSIIVSR*

Sequence

>CNT3083811
GAAATCAGAAGTAAAAAATATAGGATGATGAATCTCAAAAAGCAATAGCAATATAGAATTGGTTCGATCCCCAGGCTCGTTTGTATGAAGAGAGCATCTG
TTAGGAGATGTCAATTCATTAAATATATCAAATATATCTCCATACATCAAGGGATTAAGCTCTAGCTTTCCACAGAAGATATTCCGGACAACAAAAAGAG
AAAACGAAATGGAAATTTGGTTTAAGTACAAACAAACAAAGTGGGATGGTTACAAATAATGGAAACTTAGTAGCCTGGTGGCTTGTAGGCAATGAAACTG
ATGCACTGAACTTGACGAACACTGTCAAATCCAACGATACGGACGAAGCCGTCGGGGTAGAGAGTCCTGGCCTCTCGAAGCTCCTTCAGAACCTGAGAAG
AATCAGTGCAGCCATACATAGGCAGCTTCCACATGGTCCAGTACCTTCCATCATAGTATCCAGGTGACCTGTTGTTCTCACGGTGTGGGAAAGCGTCCTA
TAAACTCAAAACTCATATCATTACTATCAAAACTCATAACTGTTAAAAAATAACTGATTCACACAAATAATTTTACTCTTCGATCCATTGTTGGTTACTC
TGTTCCAAGAAATTTACCTTATGGCTCAACTCGAATTCCAAACAAGGGATCCATCCACTCCTAAGAAGGTAGTCTACTTCCTTACCCAGCTGTTCCTCAG
TGAGGTCTGGCAGGTAAGAGAGAGTCTCGAACTTCTTCTTCCCAATTGTTGGCCACACCTACCATCCATCATATCATAATTTCAGTAACATTTTCTATCC
ATCTAACATATAATTCCAATCTCTATCTATGTGTAGATAGATTTCTTACCTGCATGCATTGCACTCTTCCACCGTTGTTTGCAACCGAAGTAATGTCATT
GTTTGTCTTCCTCGTTGGGAACCCACCCAAGGACTTCAGCCCAGTGAACGGAGCCACCATCCCGGCGGCACCGGCACGGTTAACGGTCGTAACAGCTGGA
GAGGAGATCATTGATGAAGCCATTTCCTTCACCTTTCTGAATCACTTGCAGACTTCAGCCCAGTGAACGGAGCCACCATCCCGGCGGCACCGGCACGGTT
AACGGTCGTAACAGCTGGAGAGGAGATCATTGATGAAGCCATTTCCTTCACCTTTCTGAATCACTTGCAGTTCTACTGCCAGATGACCAAGCTTCTTCTC
CTTCTTGCTATATATAATACTGTGATTTCTTCACTACTAATCCAATGGTTTCAAATGAAAGGGATCCGTTCCTGACATGTTACAACCGTTGGATTCTATA
AGTG