Detailed information on CNT3083383


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374976Brassica junceaArabidopsis thaliana52.0938.9397.821148forward
CNT30619309Brassica junceaSesamum indicum80.4480.793.231773forward

Expression of CNT3083383

Peptides detected in this lncRNA

>peptide 1 (60 aa)
LWEPKLLLRVGNRAAGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY*

>peptide 2 (53 aa)
MSTTGRERHSVLRIFKGRRECTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR*

>peptide 3 (41 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSF

>peptide 4 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRTLRPRCL*

>peptide 5 (80 aa)
MCRPSQTPHLTMSSARIDPPKRVLGLKEGVVTPPPIHGVSKITLKVVVFHLRRSSHLFYTSQVISQSRTRVKLNRVFFPR*

>peptide 6 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 7 (29 aa)
MHRTPRDVRCSSSRWTLPPAEPFPGWAGC*

Sequence

>CNT3083383
CTTTGGGAGCCGAAGCTCCTACTGAGGGTCGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATC
CAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAGGTTGAATTACTATTGCG
ACGCGGGCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGAAAATCAGAATC
AAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCC
AAACTCCCCACCTGACAATGTCCTCCGCCCGGATCGACCCGCCGAAGCGAGTCTTGGGTCTAAAAGAAGGGGTTGTTACCCCGCCTCCGATTCACGGAGT
AAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGAGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAG
CTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCC
ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT
TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCG
TACCAGTTCTGAGTTGGCTGTTCGACGCCCGGGGAAAGCTCCCGAAAGAGCCGTTCCCAGTCCGTCCCCCGGCCGACACGAGGCGGTCCGCTCTCGCCAC
GTTAGCAGCTCAAGCAGCCCGCCAACAGTCGACGGGTTCGGAACTGGGACCCCCGAGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAAGTTACGGATCCA
TTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGCGGCACTC
GGTCCTCCGGATTTTCAAGGGCCGCCGGGAATGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTC
CAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTTCCGGAATTCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGT
TCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCATAAGCGCTATCAGACGGGTTTCCCCCGACTCTTAGGATCGACTAACCCATGTGCAAGTGCC
GTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTC
GCGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCA
TTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCC
TTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGC
TCTCGATTCCGTGGGATGGCTCAACAAAGCAGCCACCCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGACATTGCGTCCCCGATGCCTCTAATC
ATTGGCTTTACCCGATAGAACTCGTTTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCC
TATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTT
TCGG