« Back to Brassica juncea search


Detailed information on CNT3083352


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640117Brassica junceaNymphaea colorata98.890.3895.921814forward
CNT30318212Brassica junceaCorylus avellana99.0267.6396.921818forward
CNT30519047Brassica junceaJuglans regia99.1394.1596.591820reverse complement
CNT30702609Brassica junceaQuercus lobata98.5398.3296.631809reverse complement
CNT30283192Brassica junceaChenopodium quinoa98.886.1396.971814forward
CNT3021658Brassica junceaCitrullus lanatus96.6810097.351775forward
CNT30628671Brassica junceaVigna unguiculata99.0262.297.141818forward
CNT30200773Brassica junceaPisum sativum98.8661.7897.021815reverse complement
CNT30506608Brassica junceaNicotiana attenuata98.9770.795.61817reverse complement
CNT3047196Brassica junceaPrunus dulcis98.9776.0696.641817reverse complement
CNT30309594Brassica junceaCamelina sativa98.7593.8499.391813forward
CNT30422282Brassica junceaPapaver somniferum99.1357.6796.261820forward
CNT3025914Brassica junceaPopulus trichocarpa97.82100.1197.051796reverse complement
CNT30326143Brassica junceaAsparagus officinalis98.9758.9996.811817reverse complement
CNT3036478Brassica junceaCucumis melo96.7958.4597.191777reverse complement
CNT30115267Brassica junceaEutrema salsugineum99.3596.6698.521824reverse complement

Expression of CNT3083352

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPLDVLGRTRATLMYSTSSHLGRQARVIFEISS*

>peptide 2 (30 aa)
MNATWLILPVVICLSQRLSHACVSMNEFRL*

>peptide 3 (41 aa)
LDLIYECYLVDPASSHMLVSKIKPCMCKYERIQTVKLRMAH*

>peptide 4 (33 aa)
MPTRDQRMLLLGLRWHLMRNQSFWVPGGVWSQG*

>peptide 5 (44 aa)
MHLLDKRSTRALPVALMIHDNSTDRMALVLATHHSNFCPINFRW*

>peptide 6 (47 aa)
MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEASLHGRLLRGTMAV*

>peptide 7 (52 aa)
MINRDSRGHSYFIVRGEILGFMKDEQLRKHLPRMFSLIKNESWGLEDDQIPS*

Sequence

>CNT3083352
CTTGACCTGATTTATGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACGAATTCAGA
CTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTAACTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAA
ACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTCTGATGATTCATGATAACTCGACGGATCGCATGGCC
TTAGTGCTGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTAACGGGTGACGGAGAATTAGGGTT
CGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAA
TAACAATACCGGGCTCTTTGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCG
GTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACCTTGGGATGGGTCGCCCGGTCCGCCTTCGGTGAGCACCG
GTCGGCTTGTCTCTTCTGTCGGCGATACGCTCCTGGCCTTAACTGGCCGGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAA
GCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGG
GGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACG
AAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAGCGGATGTTGCTTTTAGGACTCCGCTGGCA
CCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTG
CGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCAT
GGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGGCCG
GCTTCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG
ATGTATTCAACGAGTTCACACCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAG
GAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAAGT
GTTCGGATCGCGGCGACGTGGGTGGTTCGCCGTCTGCGACGTCGCGAGAAGTCCACTAAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTC
CGTAGGTGAACCTGCGGAAGGATCATTGTCGTACCC