Detailed information on CNT3083255


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30283199Brassica junceaChenopodium quinoa99.8997.8394.742662reverse complement
CNT3060563Brassica junceaArabidopsis lyrata81.4399.0497.832170forward
CNT3023562Brassica junceaPopulus trichocarpa81.5497.3694.622173forward
CNT30583181Brassica junceaEchinochloa crusgalli84.1795.6993.272243reverse complement

Expression of CNT3083255

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYL*

>peptide 2 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 3 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRTLRPRCL*

>peptide 4 (29 aa)
MHRTPRDVRCSSSRWTLPPAEPFPGWAGC*

>peptide 5 (53 aa)
MSTTGRERHSVLRIFKGRRECTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR*

>peptide 6 (37 aa)
PLTIPRRVFKSSAKDSTRHSVVIIIQGGPNGASTERT*

>peptide 7 (80 aa)
MCRPSQTPHLTMSSARIDPPKRVLGLKEGVVTPPPIHGVSKITLKVVVFHLRRSSHLFYTSQVISQSRTRVKLNRVFFPR*

>peptide 8 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRLCTREGSSQSASLRLTGLLTR*

Sequence

>CNT3083255
GCCACTTACAATACCCCGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGCCACTCGGTGGTAATTATAATTCAAGGCGGTCCGAACGGCGCTTCC
ACCGAACGGACTTAGCCAACGACACGTGCCTTTGGGAGCCGAAGCTCCTACTGAGGGTCGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGA
TTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTC
CTCTCGTACTAGGTTGAATTACTATTGCGACGCGGGCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGT
GGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC
ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGT
ACTGAAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTAACAGA
TGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATCGACCCGCCAAAGCGAGTCTTGGGTCTAAAAGAAGGGGTTGTTACCCCGCC
TCCGATTCACGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGAGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT
CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGG
GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG
TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCG
GATTCCCCTTGTCCGTACCAGTTCTGAGTTGGCTGTTCGACGCCCGGGGAAAGCTCCCGAAAGAGCCGTTCCCAGTCCGTCCCCCGGCCGACACGAGGCG
GTCCGCTCTCGCCACGTTAGCAGCTCAAGCAGCCCGCCAACAGTCGACGGGTTCGGAACTGGGACCCCCGAGCCCAGCCCTCAGAGCCAATCCTTTTCCC
GAAGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGG
GCGTGAGCGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGAATGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTC
CGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTTCCGGAATTCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAA
CCGCCACGTCCCGGTTCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCATAAGCGCTATCAGACGGGTTTCCCCCGACTCTTAGGATCGACTAAC
CCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC
GCTCCGCCCGGGCTCGCGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCG
CTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTT
AATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAA
TGGCCCACTTGGAGCTCTCGATTCCGTGGGATGGCTCAACAAAGCAGCCACCCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGACATTGCGTCC
CCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTTTCCTGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCG
ATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGG
CATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAAATCAAGGTCGGTCGGCTGTGCACCCGTGAGGGATCCAGCC
AATCAGCTTCCTTACGCCTTACGGGTTTACTCACCCGTTGACTTGCACACATGTCAGACTCCTTG