Detailed information on CNT3082979


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QK95|RPOC2_BARVE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Brassica junceaQuercus lobata31.323.4388.75409forward

Expression of CNT3082979

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MAEDSGKICTSSGMKKKRSTFISYFVLNFWTPRYSIISSFWTIESAFRVPYLRIPELFLLYLGSSKKAKILFLRKIPFMGISIEIPECGMNSFACS*

>peptide 2 (54 aa)
MPLCRDILSVLSGKWISPENILSSILFFFLSTRINPPTWLLIFKVIRVSTPMIL*

>peptide 3 (50 aa)
MDITICKFGCMGYISTPMHFALGVRINIFSNPLFKMKSGCSLANLSNHLF*

>peptide 4 (40 aa)
MSGYLICLVRKMDIPRKYFEFNPFFFSLHSDQPADLASYI*

>peptide 5 (35 aa)
MHFLRNEKKAIYFHFVFCLKFLDSSILNHILFLDD*

>peptide 6 (30 aa)
MPVTCTCRMNQILIKFDFSIIRGSYMFGSTS

Sequence

>CNT3082979
GTGGCTACGGGCCGCACCAAAACAAAAAACTTTTTCTTGGTTGGTGTGATCCGTTGGGCATAAATCCAATTTTTTAAATTTTTTGATTCTTTAGAGTTTG
TTTTTCCCCTTCCTGGCGGTATCAAGATGCCACTATGTCGGGATATCTTATCTGTCTTGTCCGGAAAATGGATATCCCCCGAAAATATTTTGAGTTCAAT
CCTTTTTTTTTTTCTCTCCACTCGGATCAACCCGCCGACTTGGCTTCTTATATTTAAAGTGATTCGTGTATCGACTCCAATGATACTATAGTTCTGTACC
ATTATGGCGGAGGATTCGGGTAAAATATGCACTTCCTCAGGAATGAAAAAAAAGCGATCTACTTTCATTTCGTATTTTGTCTTAAATTTTTGGACTCCTC
GATACTCAATCATATCCTCTTTTTGGACGATTGAGTCCGCCTTTAGAGTTCCATATTTAAGAATTCCGGAACTCTTTCTTCTGTATCTAGGATCATCAAA
AAAAGCAAAAATACTGTTTCTACGGAAAATACCATTTATGGGTATTTCAATCGAGATACCTGAATGTGGTATGAACTCTTTCGCTTGCTCTTGAATCGAT
TGGAATGGAATGAGAAATCTATTTCTTCGCCTTTTTGCTAATAAATCCGAATTCTCATGAAAAATAGCAGAATATATGAAATTATAATGACTAGTACCTA
CGATTCCATTCAATTCTGAATAATTGGGAATCCCAGATTTTTTTTTATCAGAAAAATCTGAACTGAAAAATTTTTTGCTCACTTGATCATTATTCACTGA
GAGGCTAGAAATAGATTTTCTTTCGACGGAAAGAAAGGGTATGTTCATTTGATCTTGATCTTTGTGGATCGAAAAAAGAATTAGACTAGATCCACAAGAA
CCTCCTGATAATATCCATAAATGACTTGTTTTTGGTAAAAGATGGACATTACTATATGTAAATTCGGGTGCATGGGATACATCAGTACTCCAATGCATTT
CGCCCTCGGAGTCAGAATAAATATATTTTCTAACCCTCTCTTTAAAATGAAAAGTGGATGTTCCCTCGCGAATCTCAGCAATCACTTGTTCTGATTCCAC
ATATTGATCATTTTGAACTAAAAGAAAACTTTTTGGTGGAATAGTCACGCTATGTATAATATCTTCGCTCTCAATAATTACAGACAAGTCTATATAACAT
AGAAAGGCAGGATGCCCGTGACGTGTACGTGTAGGATGAACCAAATCCTCATTAAATTTGATTTTTCCATTATAAGGGGCTCGTACATGTTCGGCAGTAC
CTCCTG