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Detailed information on CNT3082974


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692814Brassica junceaOryza sativa31.8877.2185.61271forward
CNT30677945Brassica junceaSetaria viridis31.8817.8985.98271reverse complement
CNT3021516Brassica junceaCitrullus lanatus43.5320.1288.92370reverse complement
CNT30730658Brassica junceaCorchorus capsularis38.7141.9191.79329reverse complement
CNT30198947Brassica junceaPisum sativum22.9423.4188.72195reverse complement
CNT30502643Brassica junceaNicotiana attenuata38.8225.4885.15330reverse complement
CNT30191576Brassica junceaSecale cereale31.8869.1385.24271forward
CNT30297822Brassica junceaTriticum aestivum31.8865.7885.24271forward
CNT30543269Brassica junceaBrassica napus70.3520.298.83598reverse complement
CNT3017923Brassica junceaZea mays17.1852.1487.67146reverse complement
CNT30610477Brassica junceaGossypium raimondii38.7148.5390.88329reverse complement
CNT30232463Brassica junceaAnanas comosus13.7649.5892.31117forward
CNT30684722Brassica junceaTriticum urartu31.8825.485.24271reverse complement
CNT30356763Brassica junceaLactuca sativa26.9442.2593.45229forward
CNT30644293Brassica junceaCannabis sativa9.6525.5591.4682reverse complement
CNT3056176Brassica junceaAmborella trichopoda30.825.6484.35262reverse complement
CNT30319059Brassica junceaAsparagus officinalis36.4738.1389.35310reverse complement
CNT30150789Brassica junceaBrachypodium distachyon25.4126.1585.65216reverse complement
CNT30550344Brassica junceaOryza brachyantha23.0683.487.24196forward

Expression of CNT3082974

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MDSYRYRRKGSLSIQQVLYLWESDREREKKKTKISHSDFF*

>peptide 2 (31 aa)
MMNLFRTLRSMRTWVRFYRIKPMGLKNDGRE*

>peptide 3 (34 aa)
MRGKEIDRERSLVLIIRSCDWTRRCFGKKNNLIL*

>peptide 4 (47 aa)
MYTSPVPLLLRALRNRSDHLDIPSTQHRSSKGSRRPAKARKPGSFRK*

Sequence

>CNT3082974
GAAGAAAGGACTCACTGCGCCAAGATCACTAACTAACACTAATCTAATAGAATAGAAAATCCTAATATAATAGAAAAGAACTGTCTTTTCTGTATACTTA
TGTATACTTCCCCGGTTCCGTTGCTACTGCGGGCTTTACGCAATCGATCGGATCATCTAGATATCCCTTCAACACAACATAGGTCGTCGAAAGGATCTCG
GAGACCCGCCAAAGCACGAAAGCCAGGATCTTTCAGAAAATAAATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCCACACTAACCCGTCAATT
TGGGATCCAATTCGGATTTTCCTTGAGGGATATTGGTAAGGAATTGGAATGTAATAATATCGATTCATAATGGATTCATATCGATACAGAAGAAAAGGTT
CTCTATCGATTCAACAAGTGCTGTACTTATGGGAAAGCGATAGAGAAAGAGAAAAAAAAAAAACGAAGATTTCACATAGTGATTTTTTTTGATCAAAAAA
AAATATGATGAATTTATTTCGTACCCTTCGCTCAATGAGAACATGGGTCAGATTCTATAGGATCAAACCTATGGGACTTAAGAATGATGGAAGGGAATAA
AATCAAAAAAGAAATCAAATAAAGAAAAGAGAGGGAAAATAAAGAAATAATAAGTAAATAAAAATGAAGTAGAAGAACCCAGATTACAAATGAACAAATT
CAAACTTGAAAAAGTCTCTTTCTGATTCTCGAAGAATGAGGGGCAAAGAGATTGATCGAGAAAGATCTCTTGTTCTTATTATAAGATCGTGTGATTGGAC
CCGCAGATGTTTTGGTAAAAAGAATAATCTTATCCTTTGAGAATAATCAA