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Detailed information on CNT3082954

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30676981	Brassica juncea	Setaria viridis	14.07	26.48	86.14	166	forward
CNT30616920	Brassica juncea	Sesamum indicum	16.78	20.27	85.86	198	reverse complement
CNT30269694	Brassica juncea	Chenopodium quinoa	7.03	37.9	92.77	83	reverse complement
CNT30629896	Brassica juncea	Vigna unguiculata	13.56	40.51	90	160	reverse complement
CNT30710098	Brassica juncea	Glycine max	12.46	46.82	89.8	147	reverse complement
CNT30309040	Brassica juncea	Triticum aestivum	16.53	46.54	91.28	195	reverse complement
CNT30220886	Brassica juncea	Hordeum vulgare	16.53	36.65	90.77	195	forward
CNT30398468	Brassica juncea	Triticum turgidum	16.53	45.67	90.26	195	forward
CNT30554621	Brassica juncea	Oryza glaberrima	9.92	54.42	89.74	117	forward
CNT30140839	Brassica juncea	Lolium perenne	16.1	49.87	92.11	190	reverse complement
CNT3018231	Brassica juncea	Zea mays	16.53	69.4	90.77	195	reverse complement
CNT30609809	Brassica juncea	Gossypium raimondii	16.53	45.88	85.64	195	forward
CNT30126841	Brassica juncea	Corymbia citriodora	10.34	32.8	90.16	122	forward
CNT30713553	Brassica juncea	Malus domestica golden	16.78	29.38	91.92	198	forward
CNT30623039	Brassica juncea	Daucus carota	15.08	67.94	91.57	178	reverse complement
CNT30686586	Brassica juncea	Triticum urartu	16.53	58.21	91.28	195	forward
CNT30364323	Brassica juncea	Sorghum bicolor	16.53	54.02	90.77	195	reverse complement
CNT30370808	Brassica juncea	Oryza glumipatula	9.92	53.92	90.6	117	forward
CNT30434615	Brassica juncea	Papaver somniferum	10.34	33.7	91.8	122	forward
CNT30705531	Brassica juncea	Prunus avium	12.54	52.86	89.86	148	reverse complement
CNT30332809	Brassica juncea	Dioscorea rotundata	16.78	28.65	90.91	198	reverse complement
CNT30150010	Brassica juncea	Brachypodium distachyon	16.53	59.63	91.28	195	reverse complement
CNT30100804	Brassica juncea	Oryza rufipogon	15.93	23.41	91.49	188	forward
CNT30574740	Brassica juncea	Oryza barthii	12.37	29.67	91.78	146	forward
CNT30604668	Brassica juncea	Oryza punctata	15.42	41.46	91.21	182	forward

Expression of CNT3082954

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSKCIGRGVFRLRGKQPRERWWMKWKRECRLE*

>peptide 2 (34 aa)
MNGAKRSAEAVGCQNASVGECSALGGSNRASGGG*

>peptide 3 (41 aa)
MGKTAKSVFIIACLFSVISTCYKTKTEANLLPLPPLPEIKR*

>peptide 4 (53 aa)
MKLCVQEHPLCNCYCRVVLGALAGGCSGHITENLQCVCYMGYDKTNSSNPFTL*

>peptide 5 (35 aa)
MITPSEINIYIRENGKDSKVSVHHRLPLLGYLHLL*

>peptide 6 (39 aa)
MCKWYMSRSGGRNRSGGDWVSCRLRRRHNETMCARTSSM*

>peptide 7 (29 aa)
MVAPKPWLNFSLTLVVQNQKAVLKARAGS*

Sequence

>CNT3082954
GAGAAGCCTAGTGGTCTTGAAGGTCTATAAAAGATGAATAGCACGACATAACATGATAACTCCAAGTGAGATAAATATCTACATAAGAGAAAATGGGAAA
GACAGCAAAGTCAGTGTTCATCATCGCTTGCCTCTTCTCGGTTATCTCCACTTGCTATAAAACAAAAACTGAAGCCAACCTCCTTCCCCTCCCCCCCCTT
CCGGAAATAAAAAGATAAAAAGGACTTTTTGGCACATAATAGGTGTGCAGAGACAGCCATGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCATA
ATAGTTCACTGATTGAGCGCTCTTGCACCGAAGATGAACGGAGCTAAGCGGTCTGCCGAAGATGAACGGAGCTAAGCGGTCTGCCGAAGCTGTGGGATGT
CAAAATGCATCGGTAGGGGAGTGTTCCGCCTTAGGGGGAAGCAACCGCGCGAGCGGTGGTGGATGAAGTGGAAGCGAGAATGTCGACTTGAGTAACGCAA
ACATTGGTAGATAATCCAATGCCCGGAAAACCCAAGGGTTCCTCCGCTAGGTCTACGATTATTCATAAAAGACAATCATAAGGCTTATCAATACAGGACA
CACAAACAGCTAATATAATTTTGGAAAAAAAAGAAGAAAAATTGTTACAATCAGATTGATGTGTAAATGGTATATGAGCAGGAGCGGCGGCAGAAATAGA
AGCGGGGGTGACTGGGTGTCATGTAGACTCCGGCGGCGACATAATGAAACTATGTGTGCAAGAACATCCTCTATGTAATTGTTATTGTCGCGTGGTGTTG
GGTGCCCTTGCCGGAGGCTGTAGTGGACATATCACCGAGAATCTTCAATGTGTATGTTACATGGGCTATGACAAGACGAACTCAAGCAATCCCTTCACGC
TTTAGTTGCAGTTAAATTTCACTTCTCCGAATGTGTTTGGGTTCGACTCCAAGCTTACCACAATAGTCACGGAAATATCCAATCCTTTTCTCGACCGTAG
CAGGATCTCTTCCGCTACACTCCATACCATTTATAGCTCTAATGGTCGCTCCAAAGCCCTGGTTAAATTTCTCCTTAACGTTAGTGGTCCAGAACCAGAA
AGCGGTTTTGAAGGCAAGAGCTGGGTCTTGAGCCACTTTCTCTGGGGAAGCCAATATGTTCTCGTTTAGGTCTCTGCCAC