Detailed information on CNT3082886


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Brassica junceaOryza sativa33.4627.1386.0586forward
CNT30522907Brassica junceaSetaria italica42.819.4784.55110forward
CNT30536141Brassica junceaEucalyptus grandis38.5227.2785.8699forward
CNT30181670Brassica junceaSecale cereale42.838.4688.18110forward
CNT30230974Brassica junceaAnanas comosus31.5212.6686.4281forward
CNT30714885Brassica junceaMalus domestica golden49.0325.8786.51126forward
CNT30720826Brassica junceaTriticum spelta42.818.4686.36110forward
CNT30597158Brassica junceaOryza meridionalis57.221.4385.71147forward
CNT30371509Brassica junceaOryza glumipatula57.225.3986.39147forward
CNT30105031Brassica junceaOryza longistaminata53.3117.7785.4137forward
CNT3023479Brassica junceaPopulus trichocarpa26.8519.2286.9669forward
CNT30149302Brassica junceaBrachypodium distachyon41.6317.8987.85107forward

Expression of CNT3082886

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MGMDLTLYFWRRSVERGCEVSLAALPARGADSWVVLHLRRRVVEKLSLFRVF

>peptide 2 (51 aa)
LDVNHPLATVHLDDLSLASLVGPADDLHLVVLADGHGSDVVLLAEVGGERL*

>peptide 3 (37 aa)
RCESPTCDGTPGRPFPRVPCRSRGRSAPRRPCGWAWI*

Sequence

>CNT3082886
CTCGATGTGAATCACCCACTTGCGACGGTACACCTGGACGACCTTTCCCTCGCGTCCCTTGTAGGTCCCGCGGACGATCTGCACCTCGTCGTCCTTGCGG
ATGGGCATGGATCTGACGTTGTACTTCTGGCGGAGGTCGGTGGAGAGAGGCTGTGAAGTGAGCCTTGCGGCTCTTCCTGCGAGAGGAGCTGACTCTTGGG
TTGTACTTCATCTTCGCCGCCGGGTTGTGGAGAAACTCTCTCTTTTTAGGGTTTTTC