Detailed information on CNT3082727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374824Brassica junceaArabidopsis thaliana33.7634.1287.42159forward
CNT3044720Brassica junceaPrunus dulcis21.4415.3385.15101forward
CNT30159576Brassica junceaPistacia vera25.6915.2881.82121forward
CNT30543361Brassica junceaBrassica napus19.1129.1385.5690forward
CNT30612661Brassica junceaArabis alpina42.6869.5584.08201forward
CNT30479174Brassica junceaArabidopsis halleri94.4883.4984.72445forward
CNT30354871Brassica junceaLactuca sativa22.2932.1186.67105forward
CNT30704435Brassica junceaPrunus avium21.4415.2885.15101forward
CNT3050391Brassica junceaCucumis sativus25.2718.7183.19119forward

Expression of CNT3082727

Peptides detected in this lncRNA

>peptide 1 (47 aa)
GRFLCCSHLLESWLHRRNGRSKSFGRLLQTQLHKSHPNTEPPCTIWL*

Sequence

>CNT3082727
GGCCGGTTCCTGTGCTGTAGCCATCTGCTAGAGAGTTGGCTCCACCGCCGTAACGGACGTAGTAAGAGCTTTGGAAGGCTTTTACAAACCCAACTCCACA
AATCGCACCCAAACACTGAGCCACCATGTACAATATGGCTCTAACCAACGACACTTTACGCGCTAGTAATAGTCCAAATGTCACTGCCGGCCCAAGCGAT
ACCTAGGATACCAACTCCACCGCAGTCAACTCCCCCGGCAGTACTATCGGTCTGAATCTTGTAACCGATGACCGTCAAAACAGTGATGTACAAGAAGAGG
AGAGTAGCAACGAACTCGGCAATGACTGCTCTGTAAAAAGACCACTTGGTCAGCTCCTTCGGATCAAACAGAGGCGCCGGGGGTGGATCTTGATAGTCTC
TTGTCTGAAACCCTTCTCCGGAAACGGCTTCCACGTCCTTCGCCATAACTACTTTCTTTGCTTTTTTTTTT