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Detailed information on CNT3082633


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Brassica junceaOryza sativa25.5317.4610084forward
CNT30671914Brassica junceaSetaria viridis96.051995.57316forward
CNT30640799Brassica junceaNymphaea colorata96.0541.5289.24316forward
CNT30730480Brassica junceaCorchorus capsularis95.7425.1697.14315reverse complement
CNT30490123Brassica junceaOlea europaea95.7418.0996.83315forward
CNT30505422Brassica junceaNicotiana attenuata95.7411.8496.51315forward
CNT30712870Brassica junceaGlycine max67.7813.4295.52223forward
CNT30157615Brassica junceaPistacia vera76.2934.292.83251forward
CNT30181978Brassica junceaSecale cereale96.0535.7595.57316reverse complement
CNT30299883Brassica junceaTriticum aestivum96.051595.57316forward
CNT30221603Brassica junceaHordeum vulgare95.7426.1495.24315forward
CNT30592527Brassica junceaMusa acuminata37.6937.1398.39124forward
CNT30543279Brassica junceaBrassica napus95.7429.6698.41315forward
CNT30511493Brassica junceaSolanum lycopersicum57.1421.0395.21188reverse complement
CNT30147386Brassica junceaMedicago truncatula95.7420.4396.83315forward
CNT30435868Brassica junceaAegilops tauschii96.0522.6795.57316forward
CNT30242955Brassica junceaAvena sativa30.0910.6198.9999forward
CNT30605266Brassica junceaGossypium raimondii81.7612.8596.65269forward
CNT30207637Brassica junceaHelianthus annuus95.7416.195.24315forward
CNT30596312Brassica junceaOryza meridionalis34.9522.7397.39115reverse complement
CNT30360996Brassica junceaLactuca sativa95.7421.5996.51315forward
CNT30434643Brassica junceaPapaver somniferum95.7442.3492.06315forward
CNT3057903Brassica junceaAmborella trichopoda95.1413.0691.37313reverse complement
CNT30108930Brassica junceaOryza longistaminata96.0513.595.57316forward
CNT3038420Brassica junceaCucumis melo95.7422.0696.51315forward
CNT30550626Brassica junceaOryza brachyantha25.2328.3398.883reverse complement

Expression of CNT3082633

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQAVLVCSYRQTFGVLRSKVERETAQIVR*

Sequence

>CNT3082633
ATACGTGATATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTTGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATG
GCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCGTTCTCGTTTGTAGCTACAGAC
AGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAG
CGATGACAACCAGGAGGTGGGCTTTTCTT