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Detailed information on CNT3081485

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30540694	Brassica juncea	Brassica napus	56.88	51.01	87.3	504	forward
CNT30236524	Brassica juncea	Brassica oleracea	56.88	77.78	87.1	504	forward
CNT30508717	Brassica juncea	Solanum lycopersicum	10.84	44.86	83.33	96	forward

Expression of CNT3081485

Peptides detected in this lncRNA

>peptide 1 (36 aa)
SEVKKKKKKIRPNGIQTFPALMSPSNFDLSLRYLRL*

>peptide 2 (34 aa)
MKSLEPPKVCHVWFQFLRRNKTSMLLHLPFRLHL*

>peptide 3 (56 aa)
MNWVQRKIYLYNVTFGLYMLDWWERYLFNGLVVVLMWFVAYNGTRYFSELFKRHLA*

>peptide 4 (45 aa)
MCHLLPCFWNQLNLFIDALDRKPSCCIPDLFETWPNQYYNVCGVL*

>peptide 5 (30 aa)
MMMVMGSLFEQMAYSVKQHFSMILKTESIY*

Sequence

>CNT3081485
GTCGGAAGTCAAAAAAAAAAAAAAAAAGATTAGACCAAATGGAATACAGACTTTTCCAGCTTTGATGTCTCCGTCCAATTTTGATTTATCGCTTCGATAC
CTGAGACTCTGAAGTTAGAAACGACACCATCTCGTAGATCTCGGATCTCGTGGCGCTTTTGATATATATCCATTACATTCTCGGGAAGTGGATCAGATAT
GAATTGGGTACAACGCAAAATCTACCTTTACAATGTCACGTTCGGTCTCTACATGCTTGATTGGTGGGAACGGTACCTCTTCAATGGTTTGGTGGTAGTC
TTGATGTGGTTCGTAGCATACAACGGTACACGCTACTTTTCAGAACTCTTCAAGAGGCATTTGGCATGAAAGCAATGTCTTGTTTCTCCTGCACAGTAGA
GCATGAAAAGTCTCGAACCACCTAAGGTTTGCCACGTTTGGTTTCAATTTCTGAGACGTAACAAAACCTCTATGCTGCTTCACCTGCCTTTTCGGCTTCA
CCTCTGATTCTGTTAGCGTTCTTCCAAAGTTCGACATCACCTAGGACTGTTCAAATTGTCTATGTGTCATTTGTTACCATGCTTTTGGAATCAACTGAAC
TTATTTATAGACGCATTAGATCGCAAGCCTTCCTGTTGTATTCCCGATCTCTTTGAAACATGGCCAAACCAATACTACAATGTTTGTGGTGTTTTGTAAC
TAGTGAATACTAATCATTTTTCATCACTTCGATACCAAATGATGATGGTCATGGGCAGTTTGTTTGAACAAATGGCTTACTCTGTAAAACAACATTTTTC
TATGATCTTAAAGACCGAATCAATATACTAACAACAACAACAACAACAACTGAATAAAAAGAATGAAGAAGAAAGAATACGAAGGG