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Detailed information on CNT3081478


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Brassica junceaOryza sativa63.6423.5295.25737reverse complement
CNT30678576Brassica junceaSetaria viridis30.2269.1792.29350reverse complement
CNT30521002Brassica junceaSetaria italica10.4526.8395.87121forward
CNT30550263Brassica junceaIpomoea triloba64.346.4694.23745forward
CNT30378671Brassica junceaArabidopsis thaliana13.0453.5596.03151reverse complement
CNT30632593Brassica junceaVigna unguiculata64.7744.4393.6750forward
CNT30504974Brassica junceaNicotiana attenuata11.3123.6994.66131forward
CNT30635645Brassica junceaCapsicum annuum35.6666.7289.83413forward
CNT3098505Brassica junceaSolanum tuberosum29.1934.4594.38338reverse complement
CNT30304298Brassica junceaTriticum aestivum64.1628.0894.75743reverse complement
CNT30221494Brassica junceaHordeum vulgare28.4126.4993.31329forward
CNT30400948Brassica junceaTriticum turgidum64.1629.7294.62743reverse complement
CNT30569653Brassica junceaActinidia chinensis27.2947.0992.72316reverse complement
CNT30585815Brassica junceaMusa acuminata63.8230.4591.47739forward
CNT30234810Brassica junceaBrassica oleracea26.8641.0899.36311reverse complement
CNT30554921Brassica junceaOryza glaberrima11.9239.0994.93138forward
CNT30147394Brassica junceaMedicago truncatula64.2537.3594.76744forward
CNT30440683Brassica junceaAegilops tauschii64.1676.9294.89743forward
CNT30247816Brassica junceaAvena sativa48.4526.8594.83561forward
CNT30662061Brassica junceaTriticum dicoccoides64.1638.7294.89743reverse complement
CNT30460491Brassica junceaSaccharum spontaneum4.2324.2693.8849forward
CNT30143344Brassica junceaLolium perenne64.1633.2195.02743reverse complement
CNT3016633Brassica junceaZea mays65.3739.6192.87757reverse complement
CNT30229838Brassica junceaAnanas comosus31.7883.0792.66368reverse complement
CNT30218527Brassica junceaKalanchoe fedtschenkoi42.8333.3194.15496reverse complement
CNT3067373Brassica junceaLeersia perrieri24.1892.7293.93280forward
CNT30655299Brassica junceaRosa chinensis64.2526.2294.89744forward
CNT30203595Brassica junceaHelianthus annuus64.6840.8892.66749forward
CNT30689128Brassica junceaTriticum urartu64.1639.9794.21743forward
CNT30721611Brassica junceaTriticum spelta10.7126.995.16124reverse complement
CNT30595506Brassica junceaOryza meridionalis29.0230.5595.54336reverse complement
CNT30360998Brassica junceaLactuca sativa15.8963.4597.28184forward
CNT30369805Brassica junceaOryza glumipatula64.4252.0293.3746forward
CNT30420891Brassica junceaPapaver somniferum50.9521.9791.36590reverse complement
CNT30323793Brassica junceaAsparagus officinalis14.6853.897.06170forward
CNT3037914Brassica junceaCucumis melo29.7916.2184.35345forward
CNT30151602Brassica junceaBrachypodium distachyon15.8936.7397.28184reverse complement
CNT30104648Brassica junceaOryza rufipogon39.8179.0794.14461reverse complement
CNT30575706Brassica junceaOryza barthii64.1630.4993743forward
CNT30582488Brassica junceaEchinochloa crusgalli64.1661.295.02743forward
CNT30495774Brassica junceaDigitaria exilis33.9499.2496.18393reverse complement
CNT30116696Brassica junceaOryza nivara64.1618.7495.15743reverse complement
CNT3040451Brassica junceaMarchantia polymorpha15.6330.8394.48181forward

Expression of CNT3081478

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTSSPHGPYGLGHTRATMAITMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 2 (63 aa)
MLSKPLNLSETEESGISCGGVKSTDLRRNAKSEGSSLGLYRRWCAKAWGANGIRYPGSPCRKR*

>peptide 3 (33 aa)
MSVRPWSILIWGSANALNTPPGEYGRKTETQRN*

>peptide 4 (42 aa)
MKLESLVIADQHAAVNMYPGPVHTTHHTLGIGFPRSIGTMITQ

Sequence

>CNT3081478
AAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCAATTCCGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGCC
CCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTTGAA
AGTGAAAGTCGTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGA
TCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCGAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTAGT
CCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTATTCTGATCTGGGGCTCAGCTAACGCGTTAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGA
AACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAGAACCTTACCAGCCCTTGACATATGAACGAGA
AACCCTATCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAACGAGCG
AAACCCTCGCCTTGTGTTGCTCAGACATGCGCCTAAGGAGAAAGACTCGGCATTCAGGTGAGCCGAACGGTGGTGTGGGACGAAGGAAGTGGGTTTAGTA
CGCCCTGACAAAACCGCTCCGAAACAAACAAAAAGGTGCGTGACGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGT
CCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAG
TTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACC
ACCCATCACACCCTGGGAATTGGTTTCCCCCGAAGCATCGGAACAATGATCACCCAGC