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Detailed information on CNT3081457


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516813Brassica junceaJuglans regia25.933.6589.2956forward
CNT30275131Brassica junceaChenopodium quinoa32.875.9587.3271forward
CNT30729814Brassica junceaCorchorus capsularis32.878.6985.9271forward
CNT30402626Brassica junceaBeta vulgaris32.877.2885.9271forward
CNT30505263Brassica junceaNicotiana attenuata34.269.6287.8474forward
CNT30387046Brassica junceaTriticum turgidum25.935.9487.556forward
CNT30508764Brassica junceaSolanum lycopersicum34.2615.0185.1474forward
CNT30466191Brassica junceaSaccharum spontaneum25.938.0987.556forward
CNT3017302Brassica junceaZea mays25.937.8487.556forward
CNT3067371Brassica junceaLeersia perrieri25.937.4589.2956forward
CNT30342484Brassica junceaEragrostis tef25.938.7487.556forward
CNT30596127Brassica junceaOryza meridionalis25.938.6889.2956forward
CNT30360842Brassica junceaLactuca sativa35.1911.4888.1676forward
CNT30585288Brassica junceaEchinochloa crusgalli25.9311.1187.556forward
CNT30603959Brassica junceaOryza punctata25.937.3389.2956forward
CNT30111654Brassica junceaFicus carica32.8710.7688.7371forward

Expression of CNT3081457

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MNWVQRKIYLYNVTFGLYMLDWWERWFGGSLDVVRSIQRYTLLFRTLQEAFGMKAMSCFSCTVEHEKSRTT*

>peptide 2 (41 aa)
MSRSVSTCLIGGNDGLVVVLMWFVAYNGTRYFSELFKRHLA*

Sequence

>CNT3081457
ATGAATTGGGTACAACGCAAAATCTACCTTTACAATGTCACGTTCGGTCTCTACATGCTTGATTGGTGGGAACGATGGTTTGGTGGTAGTCTTGATGTGG
TTCGTAGCATACAACGGTACACGCTACTTTTCAGAACTCTTCAAGAGGCATTTGGCATGAAAGCAATGTCTTGTTTCTCCTGCACAGTAGAGCATGAAAA
GTCTCGAACCACCTAA