Detailed information on CNT3081185


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 3e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538312Brassica junceaBrassica napus65.4761.3196.12309forward
CNT30310638Brassica junceaCamelina sativa65.0472.9283.71307forward
CNT30725792Brassica junceaLupinus angustifolius20.133.7484.2195forward

Expression of CNT3081185

Peptides detected in this lncRNA

>peptide 1 (67 aa)
LSGVLPGDSGETFDGKSPKNTKHGPPSMDQLAFSEPFDPEHFSVGLERRRVLVEPVEIVLKILGRFT*

>peptide 2 (44 aa)
TFPASCQAIPVRPSTARAPRTPSMAHLPWISSHSLNRSIPNTSV*

Sequence

>CNT3081185
ACCTTTCCGGCGTCTTGCCAGGCGATTCCGGTGAGACCTTCGACGGCAAGAGCCCCAAGAACACCAAGCATGGCCCACCTTCCATGGATCAGCTCGCATT
CTCTGAACCGTTCGATCCCGAACACTTCAGTGTAGGGCTGGAACGGCGTCGGGTTTTGGTCGAGCCCGTCGAAATCGTACTGAAGATACTCGGCCGGTTT
ACCTAAACCGAAGGGGTCGAATCCACGGTCTCCGATCATCGAACCGTCTAGCCATTCCGGAGGGTTCGCGCCGGGGAACCAGACTAGCCGGTCTCCGTCG
TTTCGGACCTGCTTCGTTTTCTTCGGAGGTGGAGCTGGTTTCTTTTTCCCGAAGCTGAAATTGAACTTGGCTTGGACTCTACCGGCTCCGGAACTTGGAT
CTTGGATCCGGATCCCAAAGATGCCAGAGGCTGCAGCTGCAGTGGTGGTAGCCATTTTGATTTTGTTTCGGC