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Detailed information on CNT3080939

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30538573	Brassica juncea	Brassica napus	21.65	17.43	89.83	118	reverse complement
CNT3061397	Brassica juncea	Arabidopsis lyrata	12.48	26.46	92.65	68	forward
CNT30614243	Brassica juncea	Arabis alpina	11.93	25.69	89.23	65	forward
CNT30479002	Brassica juncea	Arabidopsis halleri	12.29	27.8	86.57	67	forward

Expression of CNT3080939

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MKQTQSFDRGDEHTHKQTQVLTEETKHTQTRTIFSRRRWLIKQSKSYRKIDVGDLSR*

Sequence

>CNT3080939
CCGGAATGAATCTTACGAACTAGGCCTATTGGGCCAACTGTAACCGACGCAGGCCCATAGAAACCCATGACAATGACTACGCACTTTAGATAGATGCAAA
CTTATTGCCGAAGACACAAAAAGGCAAAGATGGCCACGTCTCTAGACTCTGCTGTAAATAGGCAGTAGGCTTCTTCAGTCTTCACCATGAAGCAAACACA
AAGTTTTGACAGAGGAGACGAACACACACACAAACAAACACAAGTTTTGACAGAAGAGACAAAACACACACAAACTCGCACAATTTTCTCTCGAAGAAGG
TGGCTAATTAAGCAGTCGAAGAGTTACCGGAAGATTGACGTCGGAGATTTGTCTAGGTGACATCTCCATATTATCAGCTTCCGCTCCTCCCGCAAGATTC
TTCTTCTCCATCTGTAAGTAAAGAGAAGAGGAAGCTAAAAGGGCAAATAAAGTAAAACCAAGAAGAGGAGAAGTCATACTTATCGCCGGAGGAGAAGTTG
TAAAGCTTGCCGGAGGCTGAGACAACGAGAAGAGCGACGGATGCA