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Detailed information on CNT3080575


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376918Brassica junceaArabidopsis thaliana79.4393.4387.28668forward
CNT30623314Brassica junceaDaucus carota81.4546.3584.82685forward

Expression of CNT3080575

Peptides detected in this lncRNA

>peptide 1 (54 aa)
KRNEDAKKVHQLLIRGFIRDPNTQTMRSFKRKPDSKTETLTFDPTQDRVLEATT*

>peptide 2 (31 aa)
MVSELSTSKVIVFPVRVFTKICIPPRSLRTK*

>peptide 3 (31 aa)
MVSELSTSRVMVFPVKVLTNICIPPRSRKTK*

>peptide 4 (34 aa)
KEKRGRKEGSSIINKGLYKRPKHTNHEKFQKKTR*

Sequence

>CNT3080575
CAAAGAGAAACGAGGACGCAAAGAAGGTTCATCAATTATTAATAAGGGGCTTTATAAGAGACCCAAACACACAAACCATGAGAAGTTTCAAAAGAAAACC
AGATAGTAAAACAGAGACACTGACTTTTGATCCGACACAGGACAGAGTTCTAGAAGCCACCACGTAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTG
GATGTTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAATTTTG
GCCTTGACGTTGTCTATGGTGTCGGAACTCTCCACTTCTAGAGTGATGGTCTTTCCTGTCAAAGTCTTGACAAATATCTGCATACCTCCACGTAGTCGCA
AGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCCTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGG
GGGAATACCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATCGTCTTTCCGGTGAGAGTTTTCACG
AAGATCTGCATACCACCACGAAGCCTGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAAGGTCCTGCCATCTTCCAATTGCTTTC
CGGCGAAGATAAGCCTCTGCTGATCCGGTGGGATACCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGT
GATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCT