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Detailed information on CNT3080335


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42547|CATA3_ARATH, E-value = 7e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516671Brassica junceaJuglans regia50.7961.5479.51288forward
CNT30373064Brassica junceaArabidopsis thaliana23.2823.1291.67132forward
CNT30501026Brassica junceaCoffea canephora31.7511.7982.22180forward
CNT30616919Brassica junceaSesamum indicum16.7529.4184.2195forward
CNT30282683Brassica junceaChenopodium quinoa50.6231.1680.49287forward
CNT3021611Brassica junceaCitrullus lanatus30.5143.5882.66173forward
CNT30381388Brassica junceaManihot esculenta30.1629.3381.87171forward
CNT30405511Brassica junceaBeta vulgaris23.287.6283.33132forward
CNT30708944Brassica junceaGlycine max27.8727.7781.01158forward
CNT3046375Brassica junceaPrunus dulcis39.1531.8181.98222forward
CNT30638211Brassica junceaCapsicum annuum36.8637.4680.86209forward
CNT3098566Brassica junceaSolanum tuberosum22.9338.2483.85130forward
CNT30305192Brassica junceaTriticum aestivum22.9323.9980.77130forward
CNT30563752Brassica junceaActinidia chinensis38.4544.7682.11218forward
CNT3085325Brassica junceaVigna radiata29.2823.4881.33166forward
CNT30542306Brassica junceaBrassica napus42.3352.1792.08240forward
CNT30238041Brassica junceaBrassica oleracea38.2728.5593.09217forward
CNT30668803Brassica junceaTriticum dicoccoides26.4619.5182150forward
CNT30313764Brassica junceaCamelina sativa41.834.5593.25237forward
CNT30263082Brassica junceaBrassica rapa28.448.0685.09161forward
CNT30611006Brassica junceaArabis alpina17.8133.2289.11101forward
CNT30475173Brassica junceaSaccharum spontaneum36.3327.7382.52206forward
CNT30654455Brassica junceaRosa chinensis32.840.780.65186forward
CNT30715065Brassica junceaMalus domestica golden39.1515.6181.08222forward
CNT30624536Brassica junceaDaucus carota28.9211.6780.49164forward
CNT30478285Brassica junceaArabidopsis halleri46.0375.4390.04261forward
CNT30368538Brassica junceaSorghum bicolor20.9919.8385.71119forward
CNT30154060Brassica junceaPrunus persica39.1522.1180.63222forward
CNT30704838Brassica junceaPrunus avium39.1542.6181.53222forward
CNT3022395Brassica junceaPopulus trichocarpa37.9252.3181.86215forward
CNT3038372Brassica junceaCucumis melo29.2815.0980.72166forward
CNT30576697Brassica junceaOryza barthii16.9322.1282.2996forward
CNT3050211Brassica junceaCucumis sativus29.2844.1581.33166forward

Expression of CNT3080335

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVLFRTKRPTGCKGKISSGQILVTSSGSKSNLSSSAGSIVWMKSFHSG*

>peptide 2 (34 aa)
MFVLGFGFSAWTTSGNWIPSRMKNTGVLFPTRSKF

>peptide 3 (53 aa)
MEILSCVAVIGSSNHFGLFISKVLDPTSRCGRRNLPCVCSLVGYQHHQTSSTM*

Sequence

>CNT3080335
TCATCTGAGTAGTAGATCCCAGGAACCACAAGACCAGGGTTGAAAGCGAGCTGCTCCGTTTCATTGAAGAAGTTATCAATGGTCCTGTTCAGAACCAAAC
GACCAACTGGTTGCAAAGGCAAGATATCCTCAGGCCAGATCTTGGTCACATCAAGCGGGTCGAAATCGAACTTATCCTCATCCGCAGGATCCATTGTCTG
GATGAAAAGCTTCCACTCAGGATAGTTACCAGATGCAATGGCGTCATGGAGATCCTTAGTTGCGTGGCTGTGATTGGCTCCTCCAACCACTTTGGCCTCT
TCATCAGTAAGGTTCTTGATCCCACAAGTAGGTGTGGACGCCGAAACCTTCCATGTGTCTGTAGTCTTGTGGGATACCAACATCATCAAACATCCAGCAC
CATGTGAGCAAGCTCTCTGGTAAGTGGGACATGTAGTCCAGTATCCTCCAGTACTCTTGGATGTTTGTCTTGGGGTTTGGTTTCAGCGCGTGGACAACAT
CCGGGAACTGGATCCCGTCTCGGATGAAGAACACCGGAGTGTTGTTCCCAACAAGATCAAAGTTTCC