Detailed information on CNT3080286


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3084672Brassica junceaVigna radiata29.2723.8284.3896forward
CNT30539514Brassica junceaBrassica napus100.314.0488.75329forward
CNT30235684Brassica junceaBrassica oleracea28.6613.1585.1194forward
CNT30612419Brassica junceaArabis alpina41.4664.1586.03136forward
CNT30480070Brassica junceaArabidopsis halleri31.7126.0787.5104forward
CNT30645278Brassica junceaCannabis sativa15.8521.7688.4652reverse complement

Expression of CNT3080286

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LMGHPHPLSRPVGPIPSDGRSLNFRRLEIIVY*

>peptide 2 (57 aa)
ANGPPTPALSARGPHPIRRSVVKFPKARNHCLLTLQSPPDLFPCFGLTHTILRITSR*

Sequence

>CNT3080286
GGCTAATGGGCCACCCACACCCGCTCTCTCGGCCCGTGGGCCCCATCCCATCCGACGGTCGGTCGTTAAATTTCCGAAGGCTCGAAATCATTGTTTACTG
ACCCTGCAATCACCACCCGACCTTTTCCCGTGCTTTGGCCTCACTCACACGATATTGCGAATCACTTCCCGATAGGTCACCCATCCTTCCACTACTCCAG
CTCAAGCACGCTTAACTCTGGAGTTCTTTCTGGATGTGCTCCCGAAAAGGTAAGTGCACTTTGGTGACATAGGTAGCCAAATCAATTCTCTTAAGCCTTT
CCACATATCACAACTCGGGATGTTACAA