« Back to Brassica juncea search


Detailed information on CNT3079586


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234620Brassica junceaBrassica oleracea15.8927.1184.42154forward
CNT30259791Brassica junceaBrassica rapa46.445094.67450forward

Expression of CNT3079586

Peptides detected in this lncRNA

>peptide 1 (31 aa)
KSHEILYVRQVDILHFSKLSYSLINREFCNS*

Sequence

>CNT3079586
CAAAATCACACGAAATCTTATATGTCAGGCAAGTTGATATTTTACACTTTTCGAAACTTTCCTATTCACTCATAAATCGGGAATTCTGTAATTCTTAAGG
TATGAATTTTTCTGGGTGGTTGGAGGTAAAAGCGTTTGCTTTTCCTCCTTTCGTATAAGGGTTTCAAAATCTCTCTCGTGTCTATTGTTTCCCTTGTTTT
TTTTCAGAGATTGTTTCTAACCTAAAACACTTAGTATCTCCTTCTTCGATGTGATATTCTTCCATTATTATCACAAACTATGAAATTGGGGCTTTCTTTG
AATTTTTCAGTGAGACAAAGGCACAATTTCCATTATTTGCAGTAAGAGTGAGCCATTGCAGAGTTATTTAATGGAATCTGGAGCAAAAGCGTTGGTGAAG
TAGTTCTAGGATTTCTTCAGAGCAGAGAAGAAGTGTTTTTAGTCTGATTTTTTTTGTGCTGGTAAAGGTGGTGGTCTGCTGGTAAAGGTGGTGGTCGTGA
GCAGAGGAGAAATCTCCTCCCTTCGTCACCGGTCTCGAGCTTGCCCCTGTCATCACAGGTCTCGAATTCGTCCTGGTCGTCATCAATGGTGCCGGAGATG
GAGACAGAATAGAGGAAGACATCGAGAACAAAGAGGCAAAAGAGGAGAGAGGCGGCAGCAGAGATATTAGAGTTTGGTTAATTAGGTTTAGATTTTGGTC
AATTAGTTTTTTTGTTTAATGTGATCAATTCTAGATATAACCAGATACTTATAACTCTGGTTGCTACTTTTGTCATTAAATATGTTAACTATATAAGTTA
GACTAGCATTTAAACAGAATTGTTAGTTTTTTTATGTTGCTAATATAAGTACTCGATGTCCAATATTTAATGTCAGAAAAAAATTACATCCACAACATTT
ACTTAACCTTAATAATACACCATTAGCTTGTAAAAAATCAACACTACAAGCTAAACCACGGCATAGCAG