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Detailed information on CNT307928


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-147

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693865Zea maysOryza sativa77.4372.9686.57923forward
CNT30674319Zea maysSetaria viridis68.9682.4588.56822forward
CNT30519947Zea maysSetaria italica57.1378.188.25681forward
CNT30528288Zea maysEucalyptus grandis73.7465.686.23879forward
CNT30191758Zea maysSecale cereale77.160.3487.81919forward
CNT30305252Zea maysTriticum aestivum61.4185.7187.98732forward
CNT30226205Zea maysHordeum vulgare76.7688.6687.65915forward
CNT30553671Zea maysOryza glaberrima76.8578.7686.46916forward
CNT30242602Zea maysAvena sativa77.2780.5888.6921forward
CNT30461176Zea maysSaccharum spontaneum97.434.0691.041161forward
CNT30142111Zea maysLolium perenne77.3574.689.7922forward
CNT30228911Zea maysAnanas comosus76.8558.8386.46916forward
CNT30217449Zea maysKalanchoe fedtschenkoi75.8459.9184.4904forward
CNT30652285Zea maysRosa chinensis73.9172.3985.7881forward
CNT30716337Zea maysMalus domestica golden68.4665.8686.4816forward
CNT30684712Zea maysTriticum urartu76.9335.8388.44917forward
CNT30722465Zea maysTriticum spelta69.873.6988.58832forward
CNT30348745Zea maysEragrostis tef73.4978.8585.39876forward
CNT30364163Zea maysSorghum bicolor56.7173.6491.86676forward
CNT30595796Zea maysOryza meridionalis76.9370.8788.22917forward
CNT30370352Zea maysOryza glumipatula77.4377.9685.92923forward
CNT30704857Zea maysPrunus avium76.6857.8884.79914forward
CNT30110940Zea maysOryza longistaminata77.0133.8586.49918forward
CNT30150301Zea maysBrachypodium distachyon57.8948.8788.99690forward
CNT30576634Zea maysOryza barthii58.0564.4988.44692forward
CNT30583684Zea maysEchinochloa crusgalli60.8234.5489.24725forward
CNT30116852Zea maysOryza nivara77.4377.6986.46923forward
CNT30593897Zea maysEragrostis curvula77.3582.187.96922forward
CNT30603673Zea maysOryza punctata57.9769.8788.71691forward
CNT30174646Zea maysVigna angularis71.1481.3885.26848forward

Expression of CNT307928

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKICMPPLRRSTKWRVLSFWML*

>peptide 2 (49 aa)
MSRCWSGGMPSLSWILALTLSMVSEDSTSRVIVFPVRVLTKICICIRITK

>peptide 3 (61 aa)
MSRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVSVFTKICMPPLRRSTKWRVLSFWML*

>peptide 4 (53 aa)
MPSLSWIFAFTLSMVSELSTSRVMVLPVKVFTKICIPPRKRSTRWRVLSFWML*

>peptide 5 (79 aa)
KNIMSRLLSSNIKLHKDSSHTAAEEFWVQHRGHNRSIKPTKPQPRFMTHKPQMFIRRRHPYRGTPEGTRRRRYPGTAAA*

Sequence

>CNT307928
AAAAAAACATAATGAGCAGACTTTTAAGTTCAAATATCAAACTTCATAAGGATTCAAGCCATACTGCTGCAGAAGAGTTTTGGGTACAACACAGAGGACA
CAACAGGTCCATTAAACCAACGAAGCCACAACCACGATTCATGACACACAAACCACAGATGTTTATTAGACGACGACATCCATATAGAGGTACACCAGAG
GGCACCAGACGACGCAGATACCCAGGTACAGCAGCAGCTTAAATGAACCATGGCTTACTGACCACCGCGGAGGCGGAGCACCAGGTGGAGAGTGCTCTCC
TTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCTTTGTCCTGGA
TCTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAGGGTTATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATACCACCTCGCAA
GCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGG
TCCGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGGACTCCACCTCAAGGGTGATCGTCTTGCCAGTAAGAGTCT
TCACGAAGATCTGCATGCCACCCCTGAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCTGCAAGGGTACGGCCATCCTCCAGCTG
CTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCA
AGGGTGATCGTCTTGCCAGTAAGTGTCTTCACGAAGATCTGCATGCCACCCCTGAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGT
CGGCAAGTGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT
GTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCATCTGCATAAGAATCACCAAAC