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Detailed information on CNT3078942


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 7e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021341Brassica junceaCitrullus lanatus95.0853.7383.29425forward

Expression of CNT3078942

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MERGLLLNVVIRKSASVFELLPSEDESLLVWWDPFLVLNLCLDIIDGV*

>peptide 2 (41 aa)
DVVISQSPTILKLFTSEDESLLVRRDPFLVLNLSLHIVDCV*

>peptide 3 (33 aa)
MVSELSTSKVMVLPVRVLTKICIPPRRRRTRWSV

Sequence

>CNT3078942
GGATGTTGTAATCAGCCAAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTT
AGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAACTTCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCATACCACCACGAAGACGC
AACACAAGATGGAGCGTGGACTCCTTTTGAATGTTGTAATCCGCAAGAGTGCGTCCGTCTTCGAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTG
GTGGGATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGAC
AAAGATTTGCATACCACCACGAAGACGAAGGACAAGGTGGAGTGTCG