Detailed information on CNT3078526


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30539430Brassica junceaBrassica napus22.0715.6484.23260forward
CNT30234287Brassica junceaBrassica oleracea21.9929.1383.78259forward
CNT30263483Brassica junceaBrassica rapa22.0717.2683.85260forward

Expression of CNT3078526

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MVLYSKHLRDSPHFSHSLAFNPSHHLSRKRTKYLLMCMLSMMNNATTTELEITNSLSYQLQQWRHHLDTFQHLFNQGVLGSL*

>peptide 2 (31 aa)
MYTKSSTESSQSTTSDFFLFFCAPDFFPKAR*

>peptide 3 (32 aa)
MIGARPVADGRGKVNRVEPVSLKELGRRGLML*

>peptide 4 (33 aa)
MVLSTAAVTLHNQATESKVVRRDNDKWIRRRRS*

>peptide 5 (37 aa)
MASSSRYFPTSFQSGSARLSLKTPCNNVSAIRFTQPT*

Sequence

>CNT3078526
TTAGGAAGTTCCAGATACAGAGTCTCGCCGTCGCTTGCCTTCAGATGACTCCGCCTCCGAGAAAGTCTGTGTAACGTCTTTGGTTTTCATTTATATGGTT
CTTTACTCCAAGCATTTACGTGATTCACCCCACTTCTCCCATTCTCTCGCATTTAATCCATCTCATCATCTTTCAAGGAAACGGACAAAGTATCTATTAA
TGTGCATGCTCTCAATGATGAACAACGCGACCACGACGGAATTGGAAATAACAAACTCTTTAAGTTACCAGCTCCAGCAATGGCGTCATCATCTCGATAC
TTTCCAACATCTTTTCAATCAGGGAGTGCTAGGCTCTCTTTGAAAACCCCTTGCAACAACGTCTCGGCCATAAGGTTCACTCAGCCAACGTAGAGAAAAG
CCGGTGCCGCAAGAACTGCAAGACAGACTTTGCGAGAGCTCGAAGAGATGTTCTTGCTGGTGGCGCAGCTTCAGAATCTGAAGCATCGAAGGAATAAGTC
TCAGCAACGGGTCTTCTCGAAGACAATAACTTGACGGAGCTAATATTATACCCAAAATTGAATTGCTTCTTCTTCTTCACCACTTACTTTCCTTCGGTGG
CCACTAAAGCTATTGAGCAAAAAGTGGAATCTTTGGATGATTGGGGCGAGACCAGTAGCTGATGGTCGTGGAAAAGTGAATCGTGTCGAGCCTGTGAGCT
TAAAAGAACTTGGACGCAGAGGATTGATGTTGTAACTGCTTTATGTGTTTAATCTCCAGGACATCTTTTGATCCATAAACAGTTTGCGTTTGATAGTGAT
GCTCTTGAAGAAAAAATTACTGAGAAGAAGAGCAAGTCTTTGAGATGGTTCTTAGCACTGCAGCAGTCACGTTACACAACCAAGCTACTGAATCCAAAGT
AGTACGAAGGGATAACGACAAGTGGATACGAAGGAGGAGATCGTGAGATATAGAAGAGGCTCACAAACATTGTAGACAAGAAACATTGTAGTCAAGAGAT
GTACACAAAAAGTTCTACTGAGTCTAGCCAATCAACTACTTCAGACTTCTTCCTTTTTTTTTGTGCACCAGACTTCTTCCCTAAAGCGAGATAATTTGAA
AGTGTTTGATGTGATTGTGATAATGATCTACCCTTAATAATAAAAAATGCTCATTGACTTGAGCTTTTTTTTGACACC