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Detailed information on CNT3077965


BLAST search results

BLAST vs Swiss-Prot:
sp|P27985|RBS2_BRANA, E-value = 1e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727195Brassica junceaCorchorus capsularis36.9219.0480.91309forward
CNT30712618Brassica junceaGlycine max28.240.4181.36236forward
CNT30146094Brassica junceaMedicago truncatula23.0637.9281.87193forward
CNT3061892Brassica junceaArabidopsis lyrata39.5541.5387.31331forward
CNT30613234Brassica junceaArabis alpina38.7156.8492.28324forward

Expression of CNT3077965

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQLTLPPLLAMEVMSLLALRVAGNAADDFKPVNGATMVA*

Sequence

>CNT3077965
TAACCAAGAAGAAGAAGCAATATAGAAATTACATGTTCATAAATCAGACATTTTACAATCCGATATAGAAAGTCTCATAAACAGAAATCCAAAGAGAAAA
AAAAAAGAAACATACTTATTGGAAATGAAATGAGAAGATAGTATTATATGAAAGCGACTTAAGCACCGGTGAAGCTTGGTGGCTTGTAGGCGATGAAACT
GATGCACTGGACTTGACGGTTGTTGTCGAATCCGATGATTCTGATAAAGGCATTAGGGTACTCAGTTTTGCACTCTTGTACTTCCTTCAACACTTGAGCA
GAGTCAGTGCATCCGAACAGGGGAAGCTTCCACATTGTCCAGTAACGGCCATCGTAGTATCCGGGTGTGCTTCCGTGCTCACGGTAGTCAACTTCCTTTC
CCAATTCAACATCGGTAAGGTCAGGAAGGTAAGAGAGGGTCTCAAACTTCTTCTTTCCAATTGGTGGCCACACCTACAAATCGTATTTCCAATTAATGAA
TATTATAGTTCACTTTCGTATATACAGTTTAGACCTTTAAACGATCCTAGGTATCTATATGTACTTTTGAATAGGATTCTGTTCGAATCTACCAGTTGCG
TGTAATAAAAGACAAGCCTAATTCTATACTCTCTAGTGACATTTACCTTCATGCAGCTAACTCTTCCTCCGTTGCTTGCGATGGAAGTAATGTCGTTGTT
GGCCTTGCGGGTGGCTGGGAATGCAGCGGATGACTTCAAACCGGTAAATGGAGCGACCATGGTGGCTTGAGCCGGTGAGGTAACAACAGCGGCGGAGGAG
AGCATAGAGTAAGCCATGACTACTTCTTCTTCGTTCT