Detailed information on CNT3077671


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528694Brassica junceaEucalyptus grandis71.6363.2586.23697forward
CNT30513318Brassica junceaJuglans regia70.467.2285.26685forward
CNT30525954Brassica junceaPhaseolus vulgaris71.2263.1785.57693forward
CNT30630785Brassica junceaVigna unguiculata70.7180.6685.32688forward
CNT30201346Brassica junceaPisum sativum68.5564.6385.46667forward
CNT30710308Brassica junceaGlycine max71.4375.2288.49695forward
CNT30510145Brassica junceaSolanum lycopersicum71.4348.8185.9695forward
CNT30171188Brassica junceaTrifolium pratense71.3344.3283.86694forward

Expression of CNT3077671

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MKGRLLLDVVISESTSILELLSGEDKPLLIRWDSLLVLNLGLDVVDGVGAFHLKGDGLSCESLNEDLHLLFTKDEDQYDRIENDWFIDL

>peptide 2 (44 aa)
MVLKEIGNRGHQLFNRGFITPQTHKPTMISFKENGSKNADIVVS*

>peptide 3 (53 aa)
MPSLSWILALTLSMVSELSTSRVMVFPVRVLTKICIPPRRRNTKWRVDSFWIL*

>peptide 4 (35 aa)
KFHRIYNVTKHLRIESAWKHSNGLKRDRKQRSSII*

>peptide 5 (43 aa)
MVSELSTSRVMVFPVRVLTKICICYSQKMKINTIELRMIGLSIC

>peptide 6 (31 aa)
MVSELSTSSVIVLPVRVLTKICIPPRSLRTR*

Sequence

>CNT3077671
AAGTTTCACCGCATCTACAACGTAACCAAACATTTAAGAATAGAGTCGGCATGGAAACATTCGAATGGTCTTAAAAGAGATAGGAAACAGAGGTCATCAA
TTATTTAATAGAGGCTTTATAACGCCTCAAACACACAAACCAACCATGATAAGTTTTAAAGAAAACGGAAGTAAAAACGCAGACATTGTTGTTTCATGAT
ACGACAAAGGACAAGAGACTTAAAAGCCACCACGGAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGACCATC
CTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTC
TCAACCTCTAGAGTAATGGTCTTCCCGGTAAGGGTCTTGACAAAGATCTGCATACCTCCACGTAGACGCAACACCAAGTGGAGAGTGGACTCCTTCTGGA
TATTGTAATCAGCGAGGGTTCTGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCTTGGATCTTAGC
TTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTCTTACCGGTGAGAGTCTTAACGAAGATCTGCATACCACCACGGAGCCTGAGG
ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGTG
GGATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGAGTCTTAACGAA
GATCTGCATCTGTTATTCACAAAAGATGAAGATCAATACGATAGAATTGAGAATGATTGGTTTATCGATTTGT