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Detailed information on CNT3077545


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30274113Brassica junceaChenopodium quinoa38.1270.6787.07441forward

Expression of CNT3077545

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISFPERLSIFVRISENLTAMWEVWQSRTGA*

>peptide 2 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSFTATFLTLNPTLSPGSASTRDSWCISTDFTSVVNPEGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

Sequence

>CNT3077545
ATTAACCGCAGGAACGACATACCATATTCATTATAAAGAGAGGATCCAAAATAGTTCAGAATCCGAAAGCAAAACAAAGTAAAAAAGAAGGAAGCTAGAG
TAATGAGAAGCTTCGCCACCTCCGATCAAGAACCCAGTTACGTGAACAGAGCTCTGACGGAGAAGTAACGAAGCTGCAACACAAACAAGCGACCAAATAC
AAAACTAATGTAACATAAAAACTAAATTTGTCTTTCCATTCAACTGCGGGTGATAGAGTTTTCCTCAAGGTAGTTCACTTGGCACCCTTCTTGACGGCAG
CCTTGGTCACCTTGGCTCCCGTTGGGTCCTTCTTGTCAACGCTCTTGATGACACCGACTGCAACAGTCTGCCTCATGTCCCTAACAGCGAAACGTCCAAG
GGGTGGGTACTCGGAGAAGGTCTCAACAACCATGGGCTTGGTTGGAGTCATCTTCACCATACCAGCGTCACCATTCTTCAAGAACTTGGGCTCCTTCTCG
ATCTCTTTTCCAGAACGCCTGTCAATCTTCGTGAGGATCTCAGAGAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGAACTGGAGCGTAACCGTTAC
CAATCTGACCAGGGTGGTTCATGATGATGACCTGGGAAGTGAAGTTAGCAGCACCCTTAGCAGGGTCATCCTTGGAGTTGGATGCAACGTACCCACGCTT
GAGATCCTTCACAGCAACATTCTTGACGTTGAATCCGACGTTGTCACCTGGAAGTGCCTCCACAAGAGACTCGTGGTGCATTTCAACAGACTTCACCTCA
GTGGTCAACCCTGAAGGAGCGAAGGTCACAACCATACCAGGCTTGAGCATACCGGTCTCAACACGACCCACCGGCACCGTTCCAATACCACCAATCTTGT
AGACGTCCTGAAGTGGAAGACGGAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGTGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTC
AAGGTTGGTGGACCTCTCAATCATGTTGTCTCCCTCAAAACCAGAGATGGGGACGAATGGGATTTTGTCCGGGTTGTATCCAACCTTCTTCAAGTAGGAA
GACACCTCCTTGATGATCTCATCGTACCTAGCCTTGGAGTACTTGGGAGTAGTTGCA