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Detailed information on CNT3077259


BLAST search results

BLAST vs Swiss-Prot:
sp|A7M937|RK2_CUSGR, E-value = 2e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690835Brassica junceaOryza sativa45.1243.9394.03402forward
CNT30199079Brassica junceaPisum sativum73.9662.8291.05659forward
CNT30505842Brassica junceaNicotiana attenuata9.8825.6698.8688forward
CNT3093954Brassica junceaSolanum tuberosum100.2254.5594.29893forward
CNT30177809Brassica junceaSecale cereale56.7966.6792.49506forward
CNT30225539Brassica junceaHordeum vulgare7.1822.4696.8864reverse complement
CNT30396203Brassica junceaTriticum turgidum14.2543.4992.91127forward
CNT30511784Brassica junceaSolanum lycopersicum14.9320.2493.98133forward
CNT30441793Brassica junceaAegilops tauschii19.337.6491.86172reverse complement
CNT30314546Brassica junceaCamelina sativa75.8775.3698.96676forward
CNT30265789Brassica junceaBrassica rapa56.1261.7394.2500forward
CNT3018193Brassica junceaZea mays10.5533.9490.4394forward
CNT30609661Brassica junceaGossypium raimondii45.0123.3394.01401forward
CNT30229354Brassica junceaAnanas comosus28.6238.7595.69255forward
CNT30717682Brassica junceaMalus domestica golden16.2761.793.79145reverse complement
CNT30360476Brassica junceaLactuca sativa70.2669.9497.6626forward
CNT3054389Brassica junceaAmborella trichopoda61.2822.4394.87546forward
CNT30103751Brassica junceaOryza rufipogon24.9298.6793.24222reverse complement

Expression of CNT3077259

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MYRHAIKYFDLSSFLSKRWNRITRLKRNDHTSVMHCMSQN

>peptide 2 (36 aa)
MRQMYAFRLGSYSMVTILPYMSFVFRRKSILRYRRL*

>peptide 3 (51 aa)
MTSPSMPYGNDSSGITTFTTMMLPIDQIISWIGFHLTVYGSIACARGRSFV*

Sequence

>CNT3077259
GTCGATACTTCCACATATTATGGGTAACGTAGGAGACATCTCTATTTTTCCCCGGGGGAATCTTTAGAATTACCACTGCTTAGCTTTCAATTCGCCTCTG
ACCATCAAATGAAATGTGAATAACCCGTCCTCCTCTCTTTGAAACAAGGGGCGCTTATGGTTCTGTCGGTGCTTGAAACAATTTTGTCTTCTCCATATTA
CTATATCTCTAGAGTCAATAATTTTATATGAGGAACTACTGAACTCAATCACTTGCTGCCGTTACTCTTCATTTTCTGTTGAGGTCTATCCTGCAGAGGT
ACTCAAATTGGATCAGTGATCGATTTCTAGGTTTTGTCGTAAACCTAATTGGTTACTTCCAATTACGTAAATCAAATAGTTCAAACCGCACTCAAAGGTA
GGGCATTTCCCATTTTTATAGGAACTTCTGTACCAGAAACAATGGTATCTCCAATTATAGCCCCTCTGGGATGTAAAATATATCTCTTCTCACCATCCCC
ATAGTGTATGAGACAAATGTATGCATTTCGATTAGGGTCGTATTCTATGGTTACGATTCTACCATATATGTCTTTTGTATTTCGTCGAAAATCTATTTTA
CGGTATAGACGCTTATGACCTCCCCCTCTATGCCTTACGGTAATGATTCCTCTGGCATTACGACCTTTACCACAATGATGCTGCCCATAGATCAAATTAT
TTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATTGCGTGTGCTCGGGGTAGAAGTTTTGTATAAATGTATCGCCATGCTATTAAGTATTTTGAT
TTAAGTTCTTTTCTTTCTAAGAGGTGGAATAGAATAACCCGGTTGAAGCGTAATGATCATACGTCTGTAATGCATTGTATGTCCCAGAATA