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Detailed information on CNT3077153


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QL98|RPOB_LEPVR, E-value = 1e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269412Brassica junceaChenopodium quinoa28.2611.0688.94208forward
CNT30569543Brassica junceaActinidia chinensis27.314.292.04201forward
CNT30262672Brassica junceaBrassica rapa28.42.92100209forward
CNT30689544Brassica junceaTriticum urartu28.43.3586.12209forward

Expression of CNT3077153

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MRLFPGYSGSNTHGLAVCLLASYNSENTSFLEASCSYLSSKGAIR*

Sequence

>CNT3077153
AACAAAAAAGGTGTCATCCGATATGAAATTCCGAATGTCCTTGGAGTTAACTAAAAGATCAACATTATTGTAATAACTAGAACGCTCACCCCAACCATAA
AGCCATAACAGATGAGAAGCTATACGACTCAATTCTAGCATAATTACTCTGATATAGCTGGCTCTTTTAGGAACTTGAATATTTCCTAATTGTTCGGGTC
CGTTTACTGTTATTGCTTCTGTAAACATAGTAGCTAAATAATCCCACCGCGTTACATAAGGTAAATATTGTATAATTGCTCGGTTTTCTGCAATTTTTTC
CATTCCTCCATTTCGCCTACCCGCTGCCCCCCCTGCTTAGAACGGCCTCTAAGGGGTTGTTGTGTAACAAGTGCATAATGTCCACTAGAACGTCCGTGTA
TTTTATCATCAACCTGATGAATTAATTTCAAGATATAGGGCTTTCCTATTATCACAGGCTGTTCAAAAGGATCTCCCGTTCTTCCATCAAAAATGCGGCT
TTTTCCTGGATACTCGGGTTCAAATACCCATGGATTGGCTGTTTGCTTACTAGCTTCATATAATTCAGAAAATACGAGTTTTCTCGAAGCCTCTTGTTCA
TATCTCTCATCAAAAGGGGCTATTCGATAATGTCTATCTAGCAAACTTCCCGCTAATCCAAGCGAGCATTCAAATATCTGTCCTACATTCATGCGTGAGG
GTACTCCTAATGGGTTGAAGACCATATCCACGGGTC