Detailed information on CNT3077051


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672814Brassica junceaSetaria viridis60.6665.6786.57700forward
CNT30377782Brassica junceaArabidopsis thaliana61.3570.192.37708forward
CNT30727590Brassica junceaCorchorus capsularis75.364.1386.54869forward
CNT30525464Brassica junceaPhaseolus vulgaris50.52103.1982.68583forward
CNT30629544Brassica junceaVigna unguiculata34.3252.3885.61396forward
CNT30712097Brassica junceaGlycine max37.6136.3885.02434forward
CNT30440472Brassica junceaAegilops tauschii28.655.4687.27330forward
CNT30310177Brassica junceaCamelina sativa90.1289.6690.671040forward
CNT3059230Brassica junceaArabidopsis lyrata89.686.0290.521034forward
CNT30614135Brassica junceaArabis alpina64.4747.6992.74744forward
CNT30480841Brassica junceaArabidopsis halleri34.463.9392.95397forward
CNT30706337Brassica junceaPrunus avium72.1871.4486.55833forward
CNT3024315Brassica junceaPopulus trichocarpa59.7990.4382.46690forward
CNT30148140Brassica junceaBrachypodium distachyon30.8593.6888.48356forward
CNT30176122Brassica junceaVigna angularis73.8375.2783.33852forward
CNT3050294Brassica junceaCucumis sativus45.4185.4884.92524forward

Expression of CNT3077051

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PQERHTIFIIKRGSKIVQNPKAKQSKKEGS*

>peptide 2 (81 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPERLSILVRISENLTAMWEVWQSRTGA*

>peptide 3 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSFTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPDGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

Sequence

>CNT3077051
CCGCAGGAACGACATACCATATTCATTATAAAGAGAGGATCCAAAATAGTTCAGAATCCGAAAGCAAAACAAAGTAAAAAAGAAGGAAGCTAGAGTAATG
AGAAGCTTCGCCACCTCCGATCAAGAACCCAGTTACGTGAACAGAGCTCTGACGGAGAAGTAACGAAGCTGCAACACAAACAAGCGACCAAATACAAAAC
TAATGTAACATAAAAACTAAATTTGTCTTTCCATTCAACTGCGGGTGATAGAGTTTTCCTCAAGGTAGTTCACTTGGCACCCTTCTTGACGGCAGCCTTG
GTCACCTTGGCTCCCGTTGGGTCCTTCTTGTCAACGCTCTTGATGACACCGACTGCAACAGTCTGCCTCATGTCCCTAACAGCGAAACGTCCAAGGGGTG
GGTACTCGGAGAAGGTCTCAACAACCATGGGCTTGGTTGGAGTCATCTTCACCATACCAGCGTCACCATTCTTCAAGAACTTAGGCTCCTTCTCGATCTC
TTTACCAGAACGCCTGTCAATCTTGGTGAGGATCTCAGAGAACTTGACGGCAATGTGGGAAGTGTGGCAGTCGAGAACTGGAGCGTAACCGTTACCAATC
TGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCAGCACCCTTGGCAGGGTCATCCTTGGAGTTGGACGCAACATACCCACGCTTAAGAT
CCTTCACAGCAACATTCTTGACATTGAATCCGACGTTGTCACCTGGAAGTGCCTCCACAAGAGACTCGTGGTGCATCTCAACAGACTTAACCTCAGTGGT
CAACCCTGATGGAGCAAAGGTCACAACCATACCAGGCTTGAGCATACCGGTCTCAACACGACCCACCGGCACCGTTCCAATACCACCAATCTTGTAGACG
TCCTGAAGTGGAAGACGGAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGTGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGT
TGGTGGACCTCTCAATCATGTTGTCTCCCTCAAAACCAGAGATGGGGACGAATGGGATTTTGTCCGGGTTGTATCCAACCTTCTTCAAGTAGGAAGACAC
CTCCTTGATGATCTCATCGTACCTAGCCTTGGAGTACTTGGGAGTAGTTGCATC