Detailed information on CNT3077042


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Brassica junceaOryza sativa73.0155.8186.8879forward
CNT30521010Brassica junceaSetaria italica72.9280.5586.79878forward
CNT30639730Brassica junceaNymphaea colorata49.3464.6484.01594forward
CNT30564256Brassica junceaActinidia chinensis50.4252.1586.66607forward
CNT3084148Brassica junceaVigna radiata47.0134.7585.51566forward
CNT30541591Brassica junceaBrassica napus96.7699.0695.971165forward
CNT30238010Brassica junceaBrassica oleracea99.7598.1295.421201forward
CNT30248159Brassica junceaAvena sativa67.5274.2585.98813forward
CNT30665783Brassica junceaTriticum dicoccoides68.6990.7884.04827forward
CNT30132437Brassica junceaLolium perenne72.9273.0484.85878forward
CNT3011166Brassica junceaZea mays72.9262.0984.97878forward
CNT30608730Brassica junceaGossypium raimondii37.2174.6783.93448forward
CNT30127375Brassica junceaCorymbia citriodora43.4493.7384.7523forward
CNT30685098Brassica junceaTriticum urartu43.7735.8585.96527forward
CNT30368495Brassica junceaSorghum bicolor60.3871.3485.56727forward
CNT30151899Brassica junceaPrunus persica26.6629.186.92321forward
CNT30427756Brassica junceaPapaver somniferum71.5166.0386.53861forward
CNT3037774Brassica junceaCucumis melo37.5458.4786.95452forward
CNT30100761Brassica junceaOryza rufipogon28.3259.5187.98341forward
CNT30580076Brassica junceaEchinochloa crusgalli32.6429.7187.02393forward
CNT30496874Brassica junceaDigitaria exilis72.9278.3286.79878forward
CNT30116111Brassica junceaOryza nivara27.4937.8388.52331forward
CNT30594443Brassica junceaEragrostis curvula73.0175.7186.12879forward
CNT30603820Brassica junceaOryza punctata72.8481.2886.43877forward

Expression of CNT3077042

Peptides detected in this lncRNA

>peptide 1 (38 aa)
TNETNDKELDETLTAGTTYHIHYKERIQNSSESESKTK*

>peptide 2 (81 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISFPERLSIFVRISENLTAMWEVWQSRTGA*

>peptide 3 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSFTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPDGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

Sequence

>CNT3077042
ACACGAATGAAACAAACGATAAAGAATTAGACGAGACATTAACCGCAGGAACGACATACCATATTCATTATAAAGAGAGGATCCAAAATAGTTCAGAATC
CGAAAGCAAAACAAAGTAAAAAAGAAGGAAGCTAGAGTAATGAGAAGCTTCGCCACCTCCGATCAAGAACCCAGTTACGTGAACAGAGCTCTGACGGAGA
AGTAACGAAGCTGCAACACAAACAAGCGACCAAATACAAAACTAATGTAACATAAAAACTAAATTTGTCTTTCCATTCAACTGCGGGTGATAGAGTTTTC
CTCAAGGTAGTTCACTTGGCACCCTTCTTGACGGCAGCCTTGGTCACCTTGGCTCCCGTTGGGTCCTTCTTGTCAACGCTCTTGATGACACCGACTGCAA
CAGTCTGCCTCATGTCCCTAACAGCGAAACGTCCAAGGGGTGGGTACTCGGAGAAGGTCTCAACAACCATGGGCTTGGTTGGAGTCATCTTCACCATACC
AGCGTCACCATTCTTCAAGAACTTGGGCTCCTTCTCGATCTCTTTTCCAGAACGCCTGTCAATCTTCGTGAGGATCTCAGAGAACTTGACGGCAATGTGG
GAGGTGTGGCAGTCAAGAACTGGAGCGTAACCGTTACCAATCTGACCAGGGTGGTTCATGATGATGACCTGGGAAGTGAAGTTGGCAGCACCCTTGGCAG
GGTCATCCTTGGAGTTGGACGCAACATACCCACGCTTAAGATCCTTCACAGCAACATTCTTGACATTGAATCCGACGTTGTCACCTGGAAGTGCCTCCAC
AAGAGACTCGTGGTGCATCTCAACAGACTTAACCTCAGTGGTCAACCCTGATGGAGCAAAGGTCACAACCATACCAGGCTTGAGCATACCGGTCTCAACA
CGACCCACCGGCACCGTTCCAATACCACCAATCTTGTAGACGTCCTGAAGTGGAAGACGGAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGT
CAAGTGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCTCCCTCAAAACCAGAGATGGGGACGAATGGGAT
TTTGTCCGGGTTGTATCCAACCTTCTTCAAGTAGGAAGACACCTCCTTGATGATCTCATCGTACCTAGCCTTGGAGTACTTGGGAGTAGTTGCATCCATC
TGCC