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Detailed information on CNT3076724


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30263422Brassica junceaBrassica rapa51.8413.8798.33239forward

Expression of CNT3076724

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MQCVYKRNRSCVHKMERPFMLNELYNLYYLLYSILFAEHRIL*

>peptide 2 (32 aa)
MALKFQRRVVPNRSYSTSHRRFLSDLWNYRYK*

>peptide 3 (32 aa)
MKDLGCQIDCLKLDLGHLVNIFSFIYNYAMCI*

Sequence

>CNT3076724
GTAGTCTTGAATTATCTCTGGTACGGTTTTGCTTCACATCGTCATCTCCACTAGATTTGTTTTGAATTGTTCACTTCTTCTTCATTCTTTGTAAACGCGT
CATCTTCTTTTCGTCGGAGATCGTCGACCACACGATGGCGTTAAAGTTTCAGCGGCGAGTAGTACCAAACCGTTCCTATTCTACTTCACACCGTAGATTC
TTGTCAGATCTCTGGAACTACCGTTACAAATGAAAGATTTAGGCTGTCAAATAGATTGTTTGAAACTGGATTTGGGCCATCTGGTGAATATATTCTCATT
TATATATAATTATGCAATGTGTATATAAGCGGAATAGATCATGTGTACATAAAATGGAAAGACCATTCATGTTAAATGAATTATATAATCTTTACTATTT
GTTGTATTCTATTTTATTTGCAGAACATAGAATATTATAAATATGATTGTACAGTGCATAA