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Detailed information on CNT3076654


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK36|SAHH2_ARATH, E-value = 3e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Brassica junceaSetaria viridis21.8420.6594.12102forward
CNT30517189Brassica junceaJuglans regia27.8433.4285.38130forward
CNT30619260Brassica junceaSesamum indicum63.1727.787.8295forward
CNT3020603Brassica junceaCitrullus lanatus69.8121.0684.97326forward
CNT3072357Brassica junceaQuercus suber79.0135.9386.45369forward
CNT30380073Brassica junceaManihot esculenta37.917.1588.14177forward
CNT30402445Brassica junceaBeta vulgaris52.0354.7384.36243forward
CNT30628366Brassica junceaVigna unguiculata39.6112.9583.78185forward
CNT30200315Brassica junceaPisum sativum58.2452.7184.56272forward
CNT30505192Brassica junceaNicotiana attenuata30.6225.3185.31143forward
CNT30709695Brassica junceaGlycine max33.6247.0187.26157forward
CNT30607325Brassica junceaGossypium raimondii63.623.0285.19297forward
CNT30231757Brassica junceaAnanas comosus19.0633.8485.3989forward
CNT30651401Brassica junceaRosa chinensis33.458.2184.62156forward
CNT30365203Brassica junceaSorghum bicolor34.6975.3580.86162forward
CNT30355186Brassica junceaLactuca sativa64.0340.6284.62299forward
CNT30573685Brassica junceaVitis vinifera27.6233.0886.05129forward
CNT30705212Brassica junceaPrunus avium31.4839.9589.8147forward
CNT30645006Brassica junceaCannabis sativa30.4117.2588.03142forward
CNT30103876Brassica junceaOryza rufipogon21.8422.5292.16102forward
CNT30117878Brassica junceaOryza nivara21.8422.6792.16102forward
CNT30723196Brassica junceaLupinus angustifolius79.0146.383.2369forward

Expression of CNT3076654

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MLQTIALFFIFLMWSTMMMSLAQMGSISVTMTLAPAVFMAAAQPFPTSP*

>peptide 2 (46 aa)
MRRPSAKTMIPDLVSGNTHLSVWGLMVIRFTPGKVSSPCMSISLSK*

>peptide 3 (39 aa)
PSEVPQPSHPNAWVERTPSSRTYRSTSRSKAQAGQSPGW*

Sequence

>CNT3076654
CCCAAGTGAAGTGCCGCAACCTTCTCATCCAAATGCTTGGGTAGAACGTACACCTTCTTCTCGTACTTACCGCTCGACTTCTCGTTCCAAAGCTCAAGCT
GGGCAATCACCTGGTTGGTGAAAGAGCAAGACATGACGAAACTTGGGTGACCAGTGGCACAACCCAAGTTCATGAGACGACCCTCGGCCAAAACAATGAT
TCCGGACTTGGTGTCTGGGAACACCCACCTGTCGGTCTGGGGCTTGATGGTGATACGCTTCACTCCAGGGAAGGTCTCAAGTCCTTGCATGTCAATCTCG
TTGTCAAAGTGACCAATGTTGCAGACGATAGCGTTGTTCTTCATCTTCCTCATGTGGTCAACCATGATGATGTCTTTGGCACAGATGGGATCGATCTCGG
TCACAATGACTCTAGCACCAGCGGTTTTCATGGCAGCTGCACAACCCTTTCCGACATCACCATAACC