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Detailed information on CNT3076639


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK36|SAHH2_ARATH, E-value = 5e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670523Brassica junceaSetaria viridis23.3241.7482.55149forward
CNT30529934Brassica junceaEucalyptus grandis21.7533.3381.29139forward
CNT30702258Brassica junceaQuercus lobata42.5757.8785.29272forward
CNT30375086Brassica junceaArabidopsis thaliana61.9755.2386.36396forward
CNT30544223Brassica junceaBrassica napus68.3999.7794.51437forward
CNT30261371Brassica junceaBrassica rapa27.742.3493.79177forward
CNT30612366Brassica junceaArabis alpina39.7593.7392.91254forward
CNT30601056Brassica junceaFraxinus excelsior25.6730.3181.1164forward
CNT30680065Brassica junceaTriticum urartu18.6231.484.87119forward
CNT3026673Brassica junceaPopulus trichocarpa42.128.4784.01269forward
CNT30151326Brassica junceaBrachypodium distachyon19.8731.2885.04127forward
CNT30103811Brassica junceaOryza rufipogon17.2121.4884.55110forward
CNT30578287Brassica junceaOryza barthii18.9422.9684.3121forward

Expression of CNT3076639

Peptides detected in this lncRNA

>peptide 1 (33 aa)
DQYLPLFQTNHNENQTALSTCSEQACKVLQWEC*

>peptide 2 (55 aa)
MRRPSAKTMIPDLVSGNTHLSVWGLMVIRFTPGKVSSPCMSILKGQNLKPFHHSL*

>peptide 3 (64 aa)
TNIFHSSRQTTTRTKQLSVPVVSRLVRSFNGNADVVRLVLCQLSELSSKLAQVKCRNLLIQMLG*

Sequence

>CNT3076639
GGACCAATATCTTCCACTCTTCCAGACAAACCACAACGAGAACCAAACAGCTCTCAGTACCTGTAGTGAGCAGGCTTGTAAGGTCCTTCAATGGGAATGC
TGACGTAGTCAGATTGGTCCTTTGTCAGCTTAGTGAGCTTAGCTCCAAGCTTGCCCAAGTGAAGTGCCGCAACCTTCTCATCCAAATGCTTGGGTAGAAC
GTACACCTTCTTCTCGTACTTACCGCTCGACTTCTCGTTCCAAAGCTCAAGCTGGGCAATCACCTGGTTGGTGAAAGAGCAAGACATGACGAAACTTGGG
TGACCAGTGGCACAACCCAAGTTCATGAGACGACCCTCGGCCAAAACAATGATTCCGGACTTGGTGTCTGGGAACACCCACCTGTCGGTCTGGGGCTTGA
TGGTGATACGCTTCACTCCAGGGAAGGTCTCAAGTCCTTGCATGTCAATCCTCAAGGGTCAGAACTTGAAGCCCTTCCATCATAGCTTGTAGGGCACAGA
TGGGATCGATCTCGGTCACAATGACTCTAGCACCAGCGGTTTTCATGGCAGCTGCACAACCCTTTCCGACATCACCATAACCACAGATAACCGCAACCTT
TCCGGCGATCATGACATCAGTGGCCCTCATGAGACCATC