Detailed information on CNT3076526


BLAST search results

BLAST vs Swiss-Prot:
sp|Q680K8|Y1576_ARATH, E-value = 9e-131

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234975Brassica junceaBrassica oleracea38.3340.8896.43560forward
CNT3032618Brassica junceaTheobroma cacao21.1516.9978.32309forward

Expression of CNT3076526

Peptides detected in this lncRNA

>peptide 1 (90 aa)
LLWNKRDSIRFDSLSLRWRVSSIGLLQIRIRKMNNADSGDRYQKLRTSWKTSDIKSLSAHCINTLNSSRISNIFPNFTRYLMQLAFSSGN*

>peptide 2 (55 aa)
MWHASFRSAISYLSAAWRSANLSCRNMLRKTGERAARTARCAPMLPSEALMVMSV*

>peptide 3 (45 aa)
MISIWLVVAANSPDSGRVCMLERQSFGSSQCLHRSVIRLESALTYE

>peptide 4 (39 aa)
SFMEQERFDSIRFPLSPVEGEQHRSPPDSNSKDEQCRFW*

>peptide 5 (34 aa)
MRINKHSRYRVVELLHSILVILLAVLECGLRSRL*

>peptide 6 (33 aa)
MALIAAFSQTSTSACASTSIADIESSSCSTASW*

Sequence

>CNT3076526
ATCTTTTATGGAACAAGAGAGATTCGATTCGATTCGATTCCCTCTCTCTCCGGTGGAGGGTGAGCAGCATAGGTCTCCTCCAGATTCGAATTCGAAAGAT
GAACAATGCCGATTCTGGTGATCGTTATCAAAAATTGAGGACTTCGTGGAAGACTTCAGATATCAAATCTCTGTCTGCGCACTGCATAAATACGTTGAAC
TCCTCACGGATCTCAAATATCTTCCCAAACTTCACAAGATACCTCATGCAGCTTGCCTTCAGTTCAGGCAACTGATAGAGATAAGCGTTCTGCAGCCTCT
CGAGCACATTCTTCGTGTCTATATCCTCTACAAGACTCATGTGGCACGCGTCTTTCAGATCAGCGATATCATATTTATCAGCCGCTTGGAGAAGCGCCAA
CCTGTCGTGTAGAAACATGCTGCGGAAAACAGGCGAACGGGCAGCGAGAACAGCTCGGTGCGCTCCGATGCTTCCATCAGAGGCGTTGATGGTTATGTCG
GTGTAAATGCTTTCTGTCAACATACGTCCAAGGGATGTTACCGCTGTAACTTCGGATTGGTTCTGCGTTGAACCGTCTGCCCAGATTGAGTAAAACTCTC
CACACTGCAAATCCAGAACCTTGAGGTCAAGAAACTCGACGTCGATGATGATTTTTCCAGTCAAGGGAACTTCAATTGTCCAAAGGAAATCTTCGAACAA
AGCAAGATCTTGTCTTTACCTGGATGAGTAAAAGCTTTCCTCTCACCAGTAGAAGAGACAACACGAAGAACAAAGGAAGCAACGGGTGAAATAAAAAGAA
AGGAGAGAGAGAAGAGAGAGGTACCAGTTCCAAAGACCCATCTTGAAAGGATCGGACTTGCGGTAAGTGGAGGAAGAGAGGTTGAGGATACGCCATTGGG
CGAGCCTGGAGATGGTGTCTACTCTGTAAGCTGAATCAGTCATCCTAGAGAAAGCCAGAGCTGCAGAGATGTCATGGATGCAATCCAACCAACCCTCCAG
CAGATTCTCCCCTGACTTTCCCAGTTTAAGAAACCATTCGATCCTCTGAGAAAGCTCTGCATCGTTTCCGGCTCCTGACTCCAACTCGTTACTACAAGAC
TCGATGGCGCTGATTGCCGCGTTCAGCCAGACGTCGACGTCGGCATGCGCATCAACAAGCATAGCAGATATCGAGTCGTCGAGCTGCTCCACAGCATCTT
GGTAATTCTTCTGGCAGTCCTCGAGTGTGGCCTCCGTAGCCGGCTCTAGATCCTCTCGGCTAAGCATTTCCTTAATATAGGCGGAAGTGGAGGAGGCGTT
AGCTGAGGCGGCAGAGATAGCTATGATCTCGATCTGGTTGGTGGTGGCTGCGAACTCGCCAGACTCAGGACGGGTCTGTATGCTTGAGAGGCAGAGTTTT
GGATCGTCACAGTGTTTGCACAGATCGGTAATAAGATTGGAATCAGCATTGACATATGAGA