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Detailed information on CNT3076072

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30375299	Brassica juncea	Arabidopsis thaliana	36.22	63.17	87.85	247	forward
CNT30236827	Brassica juncea	Brassica oleracea	49.56	69.69	94.97	338	forward
CNT30263158	Brassica juncea	Brassica rapa	23.31	62.85	100	159	forward
CNT30612587	Brassica juncea	Arabis alpina	11.44	21.61	87.18	78	forward

Expression of CNT3076072

Peptides detected in this lncRNA

>peptide 1 (55 aa)
AHICNTLAQKLKLIKTATNLKVRAFMSSKRVSIISLSRHTSKRFRSTNVSVKTQI*

>peptide 2 (40 aa)
MFQSKPKYDHLTELRDLKGFIHFSLSRDSYKGFRSTQETE*

Sequence

>CNT3076072
TGCACATATTTGTAACACGTTAGCTCAAAAACTGAAACTTATCAAAACTGCCACCAATCTTAAAGTCAGAGCCTTTATGTCATCAAAAAGGGTTTCAATC
ATTTCTCTCTCTAGACACACATCTAAAAGGTTTCGTAGTACGAATGTTTCAGTCAAAACCCAAATATGATCATCTCACTGAGTTGAGAGATCTAAAGGGT
TTCATTCATTTCTCTCTCTCTAGAGACTCATATAAAGGGTTTCGTAGTACGCAAGAAACAGAGTAAAGGAGACTAATTTCTGAAACGTGAAGCATAAGGT
AACTTAAAGACTGAAGCTTGAAACAGCCTTCTAATGATGCAGTCAAAGCCAATATATAAGCATCAAAAGTGATTTCATTTTCTTTTTGACACACATCTAA
CAGAGTTGAGAGATGTGATTTGCGTACCCAGGAGCAGAACCGTCGAGGTAAGCTGGTCTTGGCTCGCCGGGCATCCAGTGAGCAGCCATTCTGACACGGC
CAACGTTCCCGGCGTTGGGGAGAGGAACTCCGGCGGAGACGAACTTAGACTTTGAAGAAGAAAGAAGAGAAGGGTAGACGGCGGCGATGCCGCAGCTCAT
GAGCGAGTTCGACGCCATTGTTCTCTCTCTCTAACTCCCTTTCTGTTTACCACAAAGAAGAAAGATGTGAACGAGAGAGAGG